Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3258 ATGAATCCTTATGATGGTCCGGTGATTGTGAAGGAAGAGTTTCCTGGAGAAGGTGTGATTGTGCCACAACCAGTTGAAGGGCTTCATGAAAGTGGTCCTCCACCATTCCTGACAAAGACTTATGACATCGTCGATGATGTTTCCACTGATGAGATAGTTTCGTGGAGCAGAGGAAACAACAGCTTCGTGGTGTGGGATCCTCAGGCTTTTTCCACCACTCTTCTCCCCAGATACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGACAACTCAACACTTATGGTTTAGAAAGGTAG 297 0.4579 MNPYDGPVIVKEEFPGEGVIVPQPVEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSTTLLPRYFKHNNFSSFVRQLNTYGLER 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3258 98 Gene3D - 28 98 IPR036388 -
Ssu7g3258 98 SMART hsfneu3 32 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g3258 98 Pfam HSF-type DNA-binding 36 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g3258 98 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 96 IPR027725 -
Ssu7g3258 98 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g3258 98 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g3258 98 PRINTS Heat shock factor (HSF) domain signature 87 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g3258 98 SUPERFAMILY "Winged helix" DNA-binding domain 31 96 IPR036390 -
Ssu7g3258 98 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 20 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3258 Ssu-Chr7 77969182 77970366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3258 22 98 HSF AT3G22830 79.221 6.45e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu7g3258 HSF_DNA-bind 2.2e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3258 K09419 - gmx:100806789 172.94