Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3250 ATGCCAGTGAGACAGATGAGAGAGAGCTCAGAACAACACCTTGTGATCAAACCCCATTTGCAGAACCCCATGAATGCAGCTAAGAAGGTTCCTAGAGCTGTTCAAAATGGGAAAGGTCTACCACCACTGCCACAAGAACCCCACAGCCAAACTTCACGTCAGGCAAGGAACAAGGGTAGAAGAAGGAGTAGAGGTGGCAGAAAATGTGATCAAGGAGATGTTTTGATGAGACCTATTGTGACAAGTACTGTTGAAAATGGCAGCACCATGTGTGGTGAAATAGAGATGGGTTACCCTACTTCCAGCAAGTCTTTTAGCTTTGCTCCTAGGCCTGGCTATGGACAAGTTGGGACAAAGTGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAGTATGATGTCAGTATTACCCCTGAAGTGTCTTCCAAAGCAGTGAACAGGTCCATTATAGCAGAACTTGTGAGGCTGTATAGAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTATACACTGCAGGGGCACTTCCCTTTTCCTGGAGAGAGTTTAAGATAAAGATTGTGGATGCTGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCTAGGGCAAACTTGCATCACTTGGGCCAGTTTCTAGCTGGTAAGCGTGCTGACGCTCCACAGCAGGCACTCCAAATTTTTGACATTGTATTAAGAGAGCTATCATCTAAGAGGTTTTGCCCAATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACTCCGCAGCCACTTGGAGAGGGTTTGGAGTCGTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGCCGCGTTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGTCGAGGCAATTGTCTGATGCTGATCGTGTTAAAATAAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGGAATGTTAGAAGAAAGTATCGTGTTTCTGGTTTGACTTCTCAACCAACAAGAGAACTTgtGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAagaaagcaaattatttacctATGGAGGCATGCAAAATTGTTGACGGACAACGATATACCAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGCCAAAGACCTCGCGATCGAGAAAATGACATTTTGCGGACCATTCAGCACAATGCTTATGATCAAGATCCATATGCAAAGGAATTTGGGattaaaattagtgaaaaattagCTTCTGTAGAAGCACGAATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTCAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTACAAGACAGTGTTGCTCGCACTTTTTGTACTGAGCTTGCTCAAATGTGCCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCATGTGGAGAAAGCTTTGAAACACGTTTACCATGTGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCTATATTACCCGACAACAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTGATATCTCAATGTTGTCTAACAAAGCATGTCTTTAAGATAACTAAGCAATACTTGGCTAATGTGTCTTTGAAAATCAATGTGAAGATGGGAGGTAGAAACACTGTGCTTGTTGACGCTATAAGCTGCAGAATACCATTGGTTAGTGACATACCTACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAACGGAGAAGACTCCAGCCCCTCGATAGCAGCTGTAGTAGCATCCCAAGACTGGCCTGAGGTGACAAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTCATACAAGATTTGTACAAAATGTGGCATGACCCTGTTCGTGGCCTAGTCAGTGGTGGCATGATTCGAGATTTGTTAATTTCCTTTAGAAAGGCAACAGGACAGAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTCAGTGAAGGACAGTTTTACCAAGTTCTACTTTATGAGTTGGACGCAATTCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACCTTCATAGTAGTCCAAAAAAGACATCATACTCGGTTATTCGCAAACAATCACAGGGACAGGAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCATCCAacagaatttgatttttatctctGCAGTCATGCTGGCATCCAGGGTACAAGCCGTCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTTACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTGGCAGCTTTTCGAGCGCGTTTCTATATGGAACCAGACCTGCAGGAAAATGGCTCCTCAGGTGGTGGTTCCAAGGCAACCCGAGCAAGTGGAGAGTGTGGAGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTATTGTTAG 2898 0.4193 MPVRQMRESSEQHLVIKPHLQNPMNAAKKVPRAVQNGKGLPPLPQEPHSQTSRQARNKGRRRSRGGRKCDQGDVLMRPIVTSTVENGSTMCGEIEMGYPTSSKSFSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRLYRESDLGMRLPAYDGRKSLYTAGALPFSWREFKIKIVDAEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQQALQIFDIVLRELSSKRFCPIGRSFFSPDIRTPQPLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILSRQLSDADRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVDGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCTELAQMCQVSGMEFNPEPVIPIYNAKPEHVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENGSSGGGSKATRASGECGVKPLPALKENVKRVMFYC 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3250 965 MobiDBLite consensus disorder prediction 1 72 - -
Ssu7g3250 965 Gene3D paz domain 308 433 - -
Ssu7g3250 965 SMART PAZ_2_a_3 319 451 IPR003100 GO:0005515
Ssu7g3250 965 SMART Piwi_a_2 603 924 IPR003165 GO:0003676
Ssu7g3250 965 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 964 - -
Ssu7g3250 965 CDD Piwi_ago-like 473 923 IPR045246 -
Ssu7g3250 965 SUPERFAMILY PAZ domain 309 469 IPR036085 GO:0005515
Ssu7g3250 965 Pfam PAZ domain 341 445 IPR003100 GO:0005515
Ssu7g3250 965 Pfam Argonaute linker 2 domain 455 501 IPR032472 -
Ssu7g3250 965 ProSiteProfiles PAZ domain profile. 315 429 IPR003100 GO:0005515
Ssu7g3250 965 Pfam Piwi domain 604 923 IPR003165 GO:0003676
Ssu7g3250 965 ProSiteProfiles Piwi domain profile. 603 924 IPR003165 GO:0003676
Ssu7g3250 965 PANTHER PROTEIN ARGONAUTE 10 57 964 - -
Ssu7g3250 965 Gene3D - 493 666 - -
Ssu7g3250 965 Pfam Argonaute linker 1 domain 263 312 IPR014811 -
Ssu7g3250 965 CDD PAZ_argonaute_like 314 428 - -
Ssu7g3250 965 Pfam Mid domain of argonaute 512 589 IPR032473 -
Ssu7g3250 965 Pfam N-terminal domain of argonaute 119 253 IPR032474 -
Ssu7g3250 965 SUPERFAMILY Ribonuclease H-like 595 925 IPR012337 -
Ssu7g3250 965 Gene3D - 672 965 IPR036397 GO:0003676
Ssu7g3250 965 SMART DUF1785_2 262 314 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3250 Ssu-Chr7 77750553 77757989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3250 1 965 Eukaryotic Initiation Factors Gene Family AT5G43810 81.627 0.0 1660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3250 K11593 - gmx:100819073 1859.34