Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3243 ATGGGGAGGACAGGCAAATGGCTTAGAAACTTGTTGACAGGGAAGAGAGacagagaaaaagagaaggaaaaatgtGCCACCAACCTGTGTTTGTTAAATGGCACAACAGAAAATCCCACCACTCCTATTTCAACAACAACCCCCAAGGAGAAAAGAAGATGGAGTTTCAGGAGATCATCAGCTTCCAGGGAATTGAATCTTGCAGAATCTGGTGTCACTGCTTCAGTGACAGTGCAAACTGCCACAGATTCTGAGAATGATCAAAGGAAACATGCCATGGTGGCTGTGGCGGCTGCTGCACCTGATGCTGTGATCTGCTTGACTCCTGATTCCAATGGATCATCAACAAGAAGTGTTGAAGAGGCTGCAGCCATTAAAATTCAGTCAGTGTTTCGGTCCTACTTGGCAAGAAAGGCATTGTGTGCTCTTAGAGGACTAGTGAAGTTGCAGGCACTAGTGAGGGGTCACTTGGTGAGAAAACAGGCCAGGGAAACACTAAGATGCATGCAGGCTTTGGTCATAGCACAAGCGAGGGCTCGTGCTCAGAGGGCGCGGATGGCGTCAGAAGGAAAGGCTGATCAAAAGATATCACCCTACAGAATAACCATACAGGACAACTTCTTCATGGATATGTATAATGAAATGGACCAGGATTTGGAAGAGAATGCCAAGATTGTAGAGATGGCTGTTTGTGAATCCAAAGGTAACTCAAGAGGCAGAAACAGAACTGCTAATCGCGAACTTTCTGAGCATAGATTTTCTGTATACTATTCATCAAATGGTTCATGCTCAAAGGAAGAAAACTACAATGCATCACCTGCACCATCAACACTGACAGAATTGAGTCCAGGAGCATGCAGTGAGCATTTTGAGGAGTGTTCCTTCAGCACAGTACAAAGCAGTCCCTATTACTACCCAGCAGCGTCAGAAGTGGAGTATACAAAGCTTCCTTTTGCTTTCCCTAGACCAGCCTACACAGAATCCATGTCCTATGACTACCCTTTATTTCCAAACTACATGGCTAACACAGAATCATCAAGGGCCAAAGCCAGATCACAGAGTGCACCAAAGGCAAGGCCGGATTCATACGAGAGGCAGCCGAGCCGGCGAAGAGCTTCAGTGGAAGGAAGAAATGTCCCAAGGCCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGTCGTCACTGCACAAAACTACCAATATCCATGGTCCATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCTACAAGTACAGTGCTCACAAACTCTAATTACTGCACATGA 1293 0.4555 MGRTGKWLRNLLTGKRDREKEKEKCATNLCLLNGTTENPTTPISTTTPKEKRRWSFRRSSASRELNLAESGVTASVTVQTATDSENDQRKHAMVAVAAAAPDAVICLTPDSNGSSTRSVEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVIAQARARAQRARMASEGKADQKISPYRITIQDNFFMDMYNEMDQDLEENAKIVEMAVCESKGNSRGRNRTANRELSEHRFSVYYSSNGSCSKEENYNASPAPSTLTELSPGACSEHFEECSFSTVQSSPYYYPAASEVEYTKLPFAFPRPAYTESMSYDYPLFPNYMANTESSRAKARSQSAPKARPDSYERQPSRRRASVEGRNVPRPVRMQRSSSHVGVVTAQNYQYPWSIKLDRSIVSECGSTSTVLTNSNYCT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3243 430 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Ssu7g3243 430 SMART iq_5 142 163 IPR000048 GO:0005515
Ssu7g3243 430 SMART iq_5 119 141 IPR000048 GO:0005515
Ssu7g3243 430 MobiDBLite consensus disorder prediction 344 390 - -
Ssu7g3243 430 Pfam Protein of unknown function (DUF4005) 325 377 IPR025064 -
Ssu7g3243 430 Pfam IQ calmodulin-binding motif 122 140 IPR000048 GO:0005515
Ssu7g3243 430 Pfam IQ calmodulin-binding motif 147 163 IPR000048 GO:0005515
Ssu7g3243 430 Gene3D - 119 167 - -
Ssu7g3243 430 PANTHER IQ-DOMAIN 5-RELATED 1 419 - -
Ssu7g3243 430 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Ssu7g3243 430 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 419 - -
Ssu7g3243 430 Coils Coil 429 430 - -
Ssu7g3243 430 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3243 Ssu-Chr7 77360804 77362730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3243 1 428 IQD Protein Family AT4G14750 45.759 2.26e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3243 - - gmx:100810189 636.721