Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3208 ATGGCAGATCCTGCTAGCTATGGGAGTCATGAGCGTGATATTGAGCAAGCGCTCATTGCTTTAAAAAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCAAAATTATGTTCATTCAGGCTCTCATCGGATGAAACAAAACTGATTTGGATTTCTCATGGAAAGcaaaagaatctaaaattgtCTTCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGCCCTGAAAAGGATTATCTgtcattttcacttatttataaaaagggGGAACGATCACTTGATCTGATCTGCAAGGACCAGGCCGAGGTAGAGGTATGGTTTTCATGTCTTAAGGCATTAATTTCCACTGGAGAGCGTATTAAGCGTGGAATAAGTGATTTAACCAATGATAGTGTTGACCCTGTTCCAAATGACCGTCCTTATGCTGGAACACTAGAGCTTGCATCAAGCATTGCCCATGGCAGGTTTTCTTTTGAATCGGTGTCTCATGAATCTACATCTTCTTGGTCAAGATCAGATGCAAATATGCCACTAAGGACAAGTTGTGGAGATGGTTCTCGTGTTAGTGTATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGAATAGATGACATAGAATCTCTGGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGTCAATTCATCTGATGGATTGGGGAGTCAAGCCTCTTGGAAGACAGATGTGCTGATTCCTAAGTCATTAGAGTCTGATGTTGTTCTTGATGTTCATCAGATTGGGCCTGGTGTACGTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGGTTTGAAAAAGATTTTGGTCGACCTCATCTTGTGGAGTCCCTAGTAGTTACCAATGTGAGTTTTGTTGCATGTGGTGAATATCATACATGTGCCGTGTCTACATCTGGTGACCTATTCACCTGGGGTGATGGTACACATAGTGCTGGACTTCTTGGTCACGGCACTAATGTTAGCTACTGGATGCCAAAGAGGGTTAGTGGCCCTTTAGAGGGATTTCAGGTTGTATCTGTAGCATGTGGCACATGGCATTCAGCATTAGCAACCTCCTATGGGAAATTGTTTACCTTTGGCGATGGAAGATTTGGTGTATTGGGCCATGGAGATCGAGAGAGTGTGTCATATCCAAAGGAAGTACAATTATTGAGTGGACACAAGGTTATTAAGGTTGCATGTGGAGTGTGGCACACAGCAGCCATTATAGAGGTTATGGATCCGTCTGGTTCAAATGCTTCATCCAGGAAGCTCTTCACATGGGGTGATGGTGACCAATATCGTTTGGGTCATGTTAACAAGGAAACCTACCTTCAACCAACTTATGTAGCTGCACTTGCTGAATATAATTTTCACCAGATTGCATGTGGGTACACTATGACTGTTGCACTCACTGCATCTGGTCATGTTTTTACTATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAATGTCTGATGGAAAAGTGCCAATTCTAGTCCGAGATAAGTTAGTAGGTGAGTTTGTGGAGGAAATATCATGTGGGGCACATCATGTTGTTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGACATGGAGACACAGATGACCAGAAAGCTCCAACATTGGTGGAAGCCTTGAAAGACAGGCATGTTAAGAATATCTCATGTGGTTCGACCTTTACATCTTGTATATGCCTACATAAATGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTTGAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGCGTGTGTGATGCTTGTTATACTAAGCTAAAAAGTTCTGATAGTGCTTCCAATTTTAATAGAGATATTAGTTGTCCTTCTAGTTCCATATATGGAAGGGAAAGATTTGACAGGGGAGAGGTAAGGTCTTCAAGAGTTCTCTTGCCTCCCATCACAGAACCGGTAAAATACCTTGAGATTAGGAGTAATAAGCCTGGAAGTACACATGACTCTTCTTCCATAGTCCGAGTTGCTCAAGTTCCTTCAAGTTTACAATTAAAAGATGTTGCATTTCCAAGTTCATTGAGTTCTGCGCAGAATGTTTACAAGCCTGTTATACAGCCAAGTCAACCTCCAACTCCACCAACACCAGCTACTTCAAGACCTATGTCACCATATGCTAGAAGACCACCAAGCCCACCACGTTCTACCTCCCCTGGGTTTTCAAGAAGTATCATTGATAATTTAAGGAAGAAAAATGATCATTTGAATCAAGAAGTCtcaaaattgcaaaataaaAATCAAAGTTTGAAGCAAAAGAGTGATATGCAAGATATGAAGATTCAGGAGCTTCAGAAAAATATTGAAGCCATGTCGCAAGTTGGAGAGGAATCTTCTAAGCATAGAGAAGCAAAGGCATTTATTAAGTCCATGGCAGATAAGTTGAGGGAAGTGGCTGGGAAGTTGCCACCTGAGATTCCTGACAACGAAACCTTGAGAACCATGCATGCTCAAGCTGAAGAATTTCttcttgaagaaaaagattttgaatCTTCTTCCTCCCCACCAAGCCTTGAGTCTGAGCAACAAAGTACACCTGATGTACCTGCCTCAGATAGCGACTCTTCAAAACTGCAAGAACaaagaataaaaggaaatgaTGATGGTTCTGGGGTTATTCCATGTATAGATGGAGGAAATATTCTTGAAGAAAGCAACAACTCATCTGTATCTAGTCCAGGAGTGCCTCTGCCAACCTCAGGAAATGGTTCGAGATTATGTGACTCTGGTATACCTgtgagagaaggagaaagatcaGTCATTGAACAGTTTGAGCATGGTGTTTATGTCACACTCATAGTACTCCCTAGTGGTTTCAAAGTTTTCAAACGAGTTAGATTCAGTAAACGAAGATTCAATGAGCAACAAGCAGCAGAATGGTGGAACCGAAACAAAGATAGGATATCTCTTCCTAAAGCAAAATGGACTCAAGTGGACGGTGgGGAGCGTGGTACTGATCAGTGA 3198 0.409 MADPASYGSHERDIEQALIALKKGTQLVKYSRKGKPKLCSFRLSSDETKLIWISHGKQKNLKLSSVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEVWFSCLKALISTGERIKRGISDLTNDSVDPVPNDRPYAGTLELASSIAHGRFSFESVSHESTSSWSRSDANMPLRTSCGDGSRVSVSSISHSSSVGSGIDDIESLGDVYIWGEVWADVNSSDGLGSQASWKTDVLIPKSLESDVVLDVHQIGPGVRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLVVTNVSFVACGEYHTCAVSTSGDLFTWGDGTHSAGLLGHGTNVSYWMPKRVSGPLEGFQVVSVACGTWHSALATSYGKLFTFGDGRFGVLGHGDRESVSYPKEVQLLSGHKVIKVACGVWHTAAIIEVMDPSGSNASSRKLFTWGDGDQYRLGHVNKETYLQPTYVAALAEYNFHQIACGYTMTVALTASGHVFTMGGTAYGQLGNPMSDGKVPILVRDKLVGEFVEEISCGAHHVVVLTSRSELYTWGRGANGRLGHGDTDDQKAPTLVEALKDRHVKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRHNCYHCGLVFCHPCSSKKALKAALAPTPSKPHRVCDACYTKLKSSDSASNFNRDISCPSSSIYGRERFDRGEVRSSRVLLPPITEPVKYLEIRSNKPGSTHDSSSIVRVAQVPSSLQLKDVAFPSSLSSAQNVYKPVIQPSQPPTPPTPATSRPMSPYARRPPSPPRSTSPGFSRSIIDNLRKKNDHLNQEVSKLQNKNQSLKQKSDMQDMKIQELQKNIEAMSQVGEESSKHREAKAFIKSMADKLREVAGKLPPEIPDNETLRTMHAQAEEFLLEEKDFESSSSPPSLESEQQSTPDVPASDSDSSKLQEQRIKGNDDGSGVIPCIDGGNILEESNNSSVSSPGVPLPTSGNGSRLCDSGIPVREGERSVIEQFEHGVYVTLIVLPSGFKVFKRVRFSKRRFNEQQAAEWWNRNKDRISLPKAKWTQVDGGERGTDQ 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3208 1065 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Ssu7g3208 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 552 599 IPR000408 -
Ssu7g3208 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 498 547 IPR000408 -
Ssu7g3208 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 385 433 IPR000408 -
Ssu7g3208 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 278 326 IPR000408 -
Ssu7g3208 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 329 380 IPR000408 -
Ssu7g3208 1065 Pfam Regulator of chromosome condensation (RCC1) repeat 449 495 IPR000408 -
Ssu7g3208 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 384 IPR000408 -
Ssu7g3208 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Ssu7g3208 1065 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 607 669 IPR017455 -
Ssu7g3208 1065 SUPERFAMILY RCC1/BLIP-II 218 604 IPR009091 -
Ssu7g3208 1065 MobiDBLite consensus disorder prediction 765 795 - -
Ssu7g3208 1065 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1052 - -
Ssu7g3208 1065 CDD PH_PLC_plant-like 12 124 - -
Ssu7g3208 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Ssu7g3208 1065 ProSiteProfiles BRX domain profile. 996 1051 IPR013591 -
Ssu7g3208 1065 SUPERFAMILY FYVE/PHD zinc finger 603 673 IPR011011 -
Ssu7g3208 1065 SMART fyve_4 601 670 IPR000306 GO:0046872
Ssu7g3208 1065 MobiDBLite consensus disorder prediction 959 982 - -
Ssu7g3208 1065 Coils Coil 804 845 - -
Ssu7g3208 1065 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1052 - -
Ssu7g3208 1065 Pfam FYVE zinc finger 603 669 IPR000306 GO:0046872
Ssu7g3208 1065 PRINTS Chromosome condensation regulator RCC1 signature 546 567 IPR000408 -
Ssu7g3208 1065 PRINTS Chromosome condensation regulator RCC1 signature 387 401 IPR000408 -
Ssu7g3208 1065 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Ssu7g3208 1065 PRINTS Chromosome condensation regulator RCC1 signature 280 296 IPR000408 -
Ssu7g3208 1065 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Ssu7g3208 1065 PRINTS Chromosome condensation regulator RCC1 signature 488 506 IPR000408 -
Ssu7g3208 1065 MobiDBLite consensus disorder prediction 908 934 - -
Ssu7g3208 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 329 IPR000408 -
Ssu7g3208 1065 MobiDBLite consensus disorder prediction 904 982 - -
Ssu7g3208 1065 SUPERFAMILY PH domain-like 13 123 - -
Ssu7g3208 1065 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Ssu7g3208 1065 Pfam Transcription factor BRX N-terminal domain 854 889 IPR027988 -
Ssu7g3208 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 675 IPR013083 -
Ssu7g3208 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
Ssu7g3208 1065 Gene3D - 13 131 IPR011993 -
Ssu7g3208 1065 MobiDBLite consensus disorder prediction 762 801 - -
Ssu7g3208 1065 Gene3D - 442 614 IPR009091 -
Ssu7g3208 1065 Gene3D - 168 441 IPR009091 -
Ssu7g3208 1065 Pfam Transcription factor regulating root and shoot growth via Pin3 996 1046 IPR013591 -
Ssu7g3208 1065 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3208 Ssu-Chr7 76298137 76308083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3208 999 1046 Major Intrinsic Protein MIP AT1G31880 47.917 5.60e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3208 - - gmx:100778984 1739.16