Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3204 ATGGTTAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACTCCAGAGGAGGATCAAATCCTCATATCATACATCCAAAACCATGGCCATGGCAACTGGCGTGCCCTCCCAAAGCTTGCAGGGCTATTAAGGTGTGGAAAGAGCTGCAGACTAAGGTGGATTAACTATTTAAAGCCTGATATCAAGAGAGGAAATTTCTCAAGTGAAGAAGAGGAAATTATCATTAAGATGCATGAGTTGCTGGGAAACAGGTGGTCAGCAATAGCAGCAAAATTACCCGGAAGAActgacaatgaaataaaaaatgtgtggcACACCCACTTGAAGAAGAGGCTACTGAATTCGGATACCAAAAGAGTTGCCAAACCAAAAATCAAACGATCTGATTCCAATTCCAGCACACTAACTACATCATCAGCATGCACTTCTTCCGGTGATTTTTCATCATTTAGTGAAGGGACTAGGAACATGGACAACATGATCAAGAGTGAAGACATAGAGTCTGTGGAGACAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGCAACGGTGGATGATGAGAGCTCCACCGTGCCATCAAATTCTTGGACAATTTCAAATGAATTAGTACCCCCTCAACATCAATTTAATTCAGTGGAGACCTTCCAACACAGTTATGGTTATAATGGTTCAAACTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCCTCAGATCAGGGGAGTCAATAGAATTGCCAGAGTTCTGA 765 0.4105 MVRAPCCEKMGLKKGPWTPEEDQILISYIQNHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNSDTKRVAKPKIKRSDSNSSTLTTSSACTSSGDFSSFSEGTRNMDNMIKSEDIESVETMPPIDESFWSEATVDDESSTVPSNSWTISNELVPPQHQFNSVETFQHSYGYNGSNFDDGMDFWYDLFLRSGESIELPEF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3204 254 CDD SANT 69 112 IPR001005 -
Ssu7g3204 254 SMART sant 66 114 IPR001005 -
Ssu7g3204 254 SMART sant 13 63 IPR001005 -
Ssu7g3204 254 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 245 - -
Ssu7g3204 254 CDD SANT 16 61 IPR001005 -
Ssu7g3204 254 Gene3D - 11 67 - -
Ssu7g3204 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu7g3204 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g3204 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g3204 254 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu7g3204 254 MobiDBLite consensus disorder prediction 123 144 - -
Ssu7g3204 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu7g3204 254 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Ssu7g3204 254 Gene3D - 68 141 - -
Ssu7g3204 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g3204 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3204 Ssu-Chr7 76239271 76241783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3204 1 254 MYB Transcription Factor Family AT2G31180 52.091 1.89e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g3204 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3204 K09422 - gmx:100806975 444.506