Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3196 ATGGATTGTTCCTCCATCCTCCACTCATCAAACTCCTCAGAATCCTCATTCGGGTCCCCTCATCACCACCTCCCCTTCAACGAAAACGACCCGGAAGAGATGCTCCTCTACGGCATGATCGCCTCGCACCAAGAAAGAACCGGCACATGCAAAGCGGTCAAGGAAGAGGAGGTGACCTCAGAGGGGAACAGTGAGAATAAGAGTAAGAACAAGAGCTTCCGCGGCGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCGACGCGCCACGGCATAAGGGTGTGGCTAGGAACCTTTGACAGCGCCGAAGCGGCGGCGCTGGCTTATGACCAAGCCGCGTTCTCCATGAGGGGCTCTAACGCAGTGCTCAACTTCCCTATTGAGAAGGTGAAGGAGTCGCTAAGGGACATGAATTGTTGCCTCTCTCAGCTTGATGGGTGTTCCCCCGTTGTGGCTTTGAAGAGGAGACACTCCCTGGGGCGGAAAATAGCTgctaagaagaagaaggaagagagtGATGTTAGGTTAGAGAATGTGGTTGTGTTGGAGGACCTAGGGGCAGAGTATTTGGAACATTTGTTGATGATGTCCTCTGATGATAATACCAGTTGTACTTGGTGA 633 0.5213 MDCSSILHSSNSSESSFGSPHHHLPFNENDPEEMLLYGMIASHQERTGTCKAVKEEEVTSEGNSENKSKNKSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSNAVLNFPIEKVKESLRDMNCCLSQLDGCSPVVALKRRHSLGRKIAAKKKKEESDVRLENVVVLEDLGAEYLEHLLMMSSDDNTSCTW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3196 210 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Ssu7g3196 210 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Ssu7g3196 210 MobiDBLite consensus disorder prediction 51 74 - -
Ssu7g3196 210 PANTHER DNA-BINDING DOMAIN 16 200 IPR044808 GO:0003700|GO:0009873
Ssu7g3196 210 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g3196 210 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Ssu7g3196 210 MobiDBLite consensus disorder prediction 51 71 - -
Ssu7g3196 210 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Ssu7g3196 210 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Ssu7g3196 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 200 - -
Ssu7g3196 210 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Ssu7g3196 210 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Ssu7g3196 210 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Ssu7g3196 210 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3196 Ssu-Chr7 75854761 75855393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3196 24 210 AP2-EREBP Transcription Factor Family AT3G23240 57.592 4.61e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g3196 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3196 K14516 - gmx:100780576 296.204