Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3195 ATGGAGGAGCGCCAAGAGGGAAAGCATGACAAGTTGAAGGAGAAGAGAAGGGAAGAAGTCCGGTACCGCGGCGTCCGGAGGCGGCCGTGGGGCACGTATGCGGCGGAGATTAGAGACCCTTCTAAGCAAAGGTCACGGTTGTGGTTGGGGACCTTTGAGACGGCAGAAGAGGCAGCTAGAGCTTATGATCAGGCAGCCTTTAGATTGAGGGGTCATGTGGCAATTTTGAATTTTCCTAATGAGTACCATTCTCATGTTAGGGGCTATCCTCCAAATTTagcatcaccatcatcatcttCCACTCATGGCAGTGTTGGACAACAAAGGCAAGTTTTTGAGTTTGAGTATTTGGATGATAACGTGTTGGAGGAGCTTCTTGAGTTTGAAGAGAAGAGCGCTAAGAAAGTTTGA 411 0.4672 MEERQEGKHDKLKEKRREEVRYRGVRRRPWGTYAAEIRDPSKQRSRLWLGTFETAEEAARAYDQAAFRLRGHVAILNFPNEYHSHVRGYPPNLASPSSSSTHGSVGQQRQVFEFEYLDDNVLEELLEFEEKSAKKV 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3195 136 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Ssu7g3195 136 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Ssu7g3195 136 PANTHER DNA-BINDING DOMAIN 8 130 IPR044808 GO:0003700|GO:0009873
Ssu7g3195 136 PANTHER ETHYLENE RESPONSE FACTOR 8 130 - -
Ssu7g3195 136 Gene3D AP2/ERF domain 20 81 IPR036955 GO:0003700|GO:0006355
Ssu7g3195 136 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Ssu7g3195 136 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Ssu7g3195 136 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Ssu7g3195 136 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Ssu7g3195 136 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3195 Ssu-Chr7 75746449 75746859 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3195 18 131 AP2-EREBP Transcription Factor Family AT3G23230 64.754 1.08e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g3195 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3195 - - gmx:100814296 192.586