Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3192 ATGGATTTTGTGAGCCAAAGACACCTACTCCATGAGTCACAAACTCCTCTCCCTAGTTCTCATTTTTATGAGACTACACATCCTTCTAGTACAAATTTTCCCCTCTTAGCAATCCTTGTAATAGGAATGATGATTACATCTTTCTTCCTTATAGGCTACTACATGCTTGTTATCAAGTGCTGCCTCAATTGGCACCATGTTGGTCATAGAAGGCCTTTTTCTCTATCCAGGCATGGTGAAGACCCATCTGTAGCATACTCAACAGCATCTGAGCCTAGAGGGCTTGAGGAATCAGTGATTAAATTAATCCCAGTGATTCACTACAACCCAGAAGAAGGGGACAGAGACTTTGGCGAGAGAAGCTTCAGTGAGTGTGCAGTTTGCTTGAGTGAGTTTCAACATGATGAGAAGCTCAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTCATTGCCCACTTTGCAGAAGAACTGTTTCCTTGACAAGCCAAGTCCATGTTGACCAAGTCCATGTTGACCAAGTCCAACTTCTTACTCCAAGGCCTTCCCCTCAGGGCCAAAGCCAAAACATTGAAAACCTCATTGGTGCTGATGAAGGTTTTGTTGTGATTGATTTGGATAGTGAACATGATAGAGACCAAAACTTGCAAGGAAGACAAGAAGAGTTAACAACTGGTCCTATTAGTCTTTCTTCACAAAGGAAGTTATTGGAGCAGAAGATAGCAAGGAAGCTTCAAAAAGTGACCAGCTTGGGGGATGAGTGTATTGGTATTAGAGCCAAAGATGAGAGATTCTCAGTTCAAGCCATGAGGAGGTCTTTCTCCATGGACTCATCAGTGAATAGACAGTTCTGTGGGACAGTTCAACAGGTTTTACAGCAACAAAATGGGCATGTCCATGAGGTCAGCACAATTGAAGCTTGTGGTGATAGTGATAGAGTCAAGAgatcattcttttcttttggacaTGGAAGCAGATCAAGAAGTGTTGTGCTACCTGTATACTTGGAcccatga 1050 0.4152 MDFVSQRHLLHESQTPLPSSHFYETTHPSSTNFPLLAILVIGMMITSFFLIGYYMLVIKCCLNWHHVGHRRPFSLSRHGEDPSVAYSTASEPRGLEESVIKLIPVIHYNPEEGDRDFGERSFSECAVCLSEFQHDEKLRVIPNCSHVFHIDCIDVWLQNNAHCPLCRRTVSLTSQVHVDQVHVDQVQLLTPRPSPQGQSQNIENLIGADEGFVVIDLDSEHDRDQNLQGRQEELTTGPISLSSQRKLLEQKIARKLQKVTSLGDECIGIRAKDERFSVQAMRRSFSMDSSVNRQFCGTVQQVLQQQNGHVHEVSTIEACGDSDRVKRSFFSFGHGSRSRSVVLPVYLDP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3192 349 Pfam Ring finger domain 124 167 IPR001841 -
Ssu7g3192 349 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Ssu7g3192 349 PANTHER RING-H2 FINGER PROTEIN ATL16 19 348 - -
Ssu7g3192 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 172 IPR013083 -
Ssu7g3192 349 CDD RING-H2_PA-TM-RING 124 167 - -
Ssu7g3192 349 PANTHER RING-H2 FINGER PROTEIN ATL16 19 348 IPR044600 GO:0016567|GO:0016740
Ssu7g3192 349 SUPERFAMILY RING/U-box 103 173 - -
Ssu7g3192 349 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3192 Ssu-Chr7 75639404 75640453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3192 23 349 C3H Transcription Factor Family AT1G04360 42.017 3.65e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3192 - - gmx:100814827 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1239 4 19869360 19870271 Ssu7g3192 7 75639404 75640453 PCT