Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3191 ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAATCGCCCCCTGATTTCCTTTGGTCCAATCATAGTGTGGGCACCGAAATTGACATTCCAGGTGATGGTGTTGCTAGTCAAGAGAACACCAGGAAGAGGGGACGCACTGATTCATGCTGCAAGGCGGGATCAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCCGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCTGAGGAGCTCaaaaacacaaatgaaaaattattagaggaaataaaatgtttaaagGAAGAGAAGAATGAACTTCGAGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAAGCCTTGCCCATTGCACCAGCAGGGTTTATGCCTCCCCCTGTAGCTGCAGCATATCAAGCAGGGGTTAACAAGATGGCTGTTTATCCAACAAACTATGGCTATATCCCAATGTGGCAATATCTTCCTCCATCTGCCAGAGATACATCCCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 651 0.4378 MDSLEDSGCWDFLDYSFIDQSPPDFLWSNHSVGTEIDIPGDGVASQENTRKRGRTDSCCKAGSKACREKLRREKLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAEELKNTNEKLLEEIKCLKEEKNELREEKLVLKADKERIEKQLKALPIAPAGFMPPPVAAAYQAGVNKMAVYPTNYGYIPMWQYLPPSARDTSHDHELRPPAA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3191 216 PANTHER TRANSCRIPTION FACTOR BHLH104 1 216 - -
Ssu7g3191 216 CDD bHLH_AtILR3_like 64 139 - -
Ssu7g3191 216 Gene3D - 62 140 IPR036638 GO:0046983
Ssu7g3191 216 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Ssu7g3191 216 PANTHER BHLH TRANSCRIPTION FACTOR 1 216 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Ssu7g3191 216 SMART finulus 65 116 IPR011598 GO:0046983
Ssu7g3191 216 Coils Coil 100 155 - -
Ssu7g3191 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Ssu7g3191 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 131 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3191 Ssu-Chr7 75603097 75607583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3191 49 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.639 7.55e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g3191 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3191 - - gmx:100787583 362.073