Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3186 ATGGCCGAAGAAGAACCTTCGATAACGTCACCGCCGGAAGGAACACTCCACAAGTTCCTCTCCCGGAAGGGCAAGCCCGTCATCGCCGCGCAGCCTCTCACGGTGGTCCGCGCCGTCACCAGCACCGGCGGCGCGCGCGTCCTCGCCGCGCCGCCGAACCCGAACGAGGACATGCCGCCGCCGCGGCCGCCACCACcacaagaaggagaagaaggacAAGGCGAAACCGGCTTCGAGGTTTCTCATCCCGCGGCGCCGAATAAAACGCAGCAACGACACAAGTTTACGTTCGACGAGTTTCTCAAGGCCACGAGCACGAAGGTCGCGACCGAAGGCGAGGCTCTGAAGTCAATGGCGCCGccggaagaagaagaagaggaggaagtgGAATCATCACCGGTTCAGCCGGTGCCGAAGGAATCGCGACCGGTTCGACCGGTGCAGAAAGGAGCGGGTATCGATGACCTGGAGGCGGTGGAGGCGCGTAAGTTTGCGGAGAGGAGGAATATTCCGAATCTGGAGGATGGGGAGTTTCCGGAAGAGGCTGGGTGGTTCTTGCTGGGAAGGAAGGTGGAGGTCGCCGTTTCGACGGCAAGAGGGGTGAGGAAGTTGGTGGACAATGAAATCGTTCATTTCAATTTCCCCCTTCCCACGTACTCGAGTAAGTCTCAGTGGATCGTTCGCGTCTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCGAAGACTGTGATTCCGCTTATGCAATCTGGAAGGGTTAAGGTTCGAGGGCGGTGCATTGCTGCGCCAGATAAACTGCAAATGATGCAAGAGATTATGTTTTTAGTGAGctTTTATATTCACCACTCTGTATTTGCTGAGCGTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTGTCTACCCACTTCTTACCCTATTAAAAATGCTAGAGATCAAGCCAAGTCAAAAGGCTGAGTTCACCCCTGAGGATATAGATTCTCGGAAGCGGTTGCTTTATCGGAAGGCTGATCCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAAGGTGGTGAGCCCCTTCCAGAGCAAAATAATGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTTTAGAAATCTATGACCTAAAGGAGAAGGAAGCCCCAAAGGCACTTATGTGTAATCTAAAGCCTTACCAGAAACAAGCACTTTTTTGGATGTCTGAAATAGAAAAGGGAATGGATGTTGAGAGTGCAGAAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACAATTTATGTGAACATATTTACGGGAGAAGCATCAAGGAAATTCCCAAAAGCAACGCAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGGCTTGGAAAGACTGTTATGACAATTGCTCTGATACTCAGTAACCCAGGCAGGGGCAACTCAGAAAACATTGATGTAGAGAATGGAGATGATAATATCAtcacaaacaaaagaaagaatgcTAACACCTTGCATAAAGTTGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAGCCAGATAGTATATCCATATTTGTTCATTATGGTGGCGGAAGAACGAATGATCCCTGGTTGATCTCAGGGCATGATATTGTCTTAACAACGTATGGTGTCCTATCAGCTGCATACAAAAATGATGGAGAGAACAGCATCTACCACAGGGTCCAGTGGTACAGGGTGGTGCTAGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGATTGCCCAGGCTGCTTTTACTTTGTCCTCACACAGCCGCTGGTGTCTAACTGGAACCCCGCTTCAGAATAGCTTGGAAGACCTATACAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGTAACTGGGCATGGTGGCAAAAGTTGGTTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACGAAGGAATCGAAGGATAAGGAAGGAAGGCCTATACTTTTCCTGCCACCAATTGATATTCAATTGATTGCGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGAAGCCCTTTTCGCGAGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTTCACCATTATGCGAATATCCTTGACTTACTAATGCAATTGAGACGGTGTTGTAACCATCCATTTTTGGTAATGGGCGGAAGCGATTCCCAGAAATATGCAGACTTAAGCAGACTCGCAAGAAGATTCCTTCAGTCTAATACTGAATCCCCCTACGAAAGCAATCAAAATGATCCACAGCAACAAGCAGAGTTGAACAAACTCGCAAGTAGACTCCTTCTAAAGTCTGCTTCTTCGCACTCTATCCAACCTCCTGCGTACATTGCCGAGGTTTTGGAGAATATTCAAAAGGGTGACACCGTAGAATGCTCTATATGTATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCACATAAATTTTGTAGAGAATGTCTATTTAGTTGCTGGGGCACCTCAGCGGGTGGCAAATGTCCAATCTGTCGTCAATTGCTCCAGAAAGACGATCTCATTACTTGTCCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCCAAACTATTAGATTTCCTGCAACGTATTCTGAACTCATCAAGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGACCTGTTGGAGAATCCATTGAGGAGGAGGGGAATTGGTTTTTTAAGATATGATGGGAAATTGACTCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATGAAACGAGAGAGAAAAGGGTTTTGTTGATGTCACTAAAGGCTGGTGGTGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGGGTTATTGTTAGAAGATTCATCATGAAGGACACAGTGGAAGATCGATTGCAACTAGTGCAAGCCaggaaacaaaggatgatatcCGGTGCCCTTACCGACGACGAGGTTCGGACTGCTAGGATTCAAGACCTCAAAATGCTATTCAcatga 3264 0.4547 MAEEEPSITSPPEGTLHKFLSRKGKPVIAAQPLTVVRAVTSTGGARVLAAPPNPNEDMPPPRPPPPQEGEEGQGETGFEVSHPAAPNKTQQRHKFTFDEFLKATSTKVATEGEALKSMAPPEEEEEEEVESSPVQPVPKESRPVRPVQKGAGIDDLEAVEARKFAERRNIPNLEDGEFPEEAGWFLLGRKVEVAVSTARGVRKLVDNEIVHFNFPLPTYSSKSQWIVRVSTKRSGEVGRMPMEWAKTVIPLMQSGRVKVRGRCIAAPDKLQMMQEIMFLVSFYIHHSVFAERVDTSWRLEACGKIDDTVYPLLTLLKMLEIKPSQKAEFTPEDIDSRKRLLYRKADPDEAAALPLIKRRKGGEPLPEQNNDEQALSESALNKLVGALEIYDLKEKEAPKALMCNLKPYQKQALFWMSEIEKGMDVESAERNLHPCWSAYTICKGRTIYVNIFTGEASRKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRGNSENIDVENGDDNIITNKRKNANTLHKVEGGTLIVCPMALLGQWKDELETHSKPDSISIFVHYGGGRTNDPWLISGHDIVLTTYGVLSAAYKNDGENSIYHRVQWYRVVLDEAHNIKAHRSQIAQAAFTLSSHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLVQRPYENGDPRSLKLVKAILRMLMLRRTKESKDKEGRPILFLPPIDIQLIACEQSESERDFYEALFARSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMGGSDSQKYADLSRLARRFLQSNTESPYESNQNDPQQQAELNKLASRLLLKSASSHSIQPPAYIAEVLENIQKGDTVECSICMESPEDPVFTPCAHKFCRECLFSCWGTSAGGKCPICRQLLQKDDLITCPSESPFKVDIKNNVTESSKVSKLLDFLQRILNSSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVIVRRFIMKDTVEDRLQLVQARKQRMISGALTDDEVRTARIQDLKMLFT 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3186 1087 CDD DEXDc_SHPRH-like 405 693 - -
Ssu7g3186 1087 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 351 1086 - -
Ssu7g3186 1087 MobiDBLite consensus disorder prediction 53 68 - -
Ssu7g3186 1087 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 927 1087 IPR001650 -
Ssu7g3186 1087 MobiDBLite consensus disorder prediction 44 93 - -
Ssu7g3186 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 914 IPR013083 -
Ssu7g3186 1087 SMART helicmild6 951 1034 IPR001650 -
Ssu7g3186 1087 Pfam SNF2-related domain 408 771 IPR000330 GO:0005524|GO:0140658
Ssu7g3186 1087 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 461 655 IPR014001 -
Ssu7g3186 1087 CDD SF2_C_SNF 913 1045 - -
Ssu7g3186 1087 Pfam Zinc finger, C3HC4 type (RING finger) 849 894 - -
Ssu7g3186 1087 SMART HIRAN_2 187 284 IPR014905 GO:0003676|GO:0008270|GO:0016818
Ssu7g3186 1087 PANTHER DNA REPAIR PROTEIN RAD5B 351 1086 - -
Ssu7g3186 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 693 IPR027417 -
Ssu7g3186 1087 Gene3D - 709 1087 IPR027417 -
Ssu7g3186 1087 SMART ring_2 851 890 IPR001841 -
Ssu7g3186 1087 SUPERFAMILY RING/U-box 835 897 - -
Ssu7g3186 1087 MobiDBLite consensus disorder prediction 108 147 - -
Ssu7g3186 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 1077 IPR027417 -
Ssu7g3186 1087 Pfam HIRAN domain 195 277 IPR014905 GO:0003676|GO:0008270|GO:0016818
Ssu7g3186 1087 Pfam Helicase conserved C-terminal domain 921 1034 IPR001650 -
Ssu7g3186 1087 Gene3D - 457 694 IPR038718 -
Ssu7g3186 1087 ProSiteProfiles Zinc finger RING-type profile. 851 891 IPR001841 -
Ssu7g3186 1087 SMART ultradead3 401 674 IPR014001 -
Ssu7g3186 1087 ProSitePatterns Zinc finger RING-type signature. 866 875 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3186 Ssu-Chr7 75507374 75513818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3186 126 1086 RAD5 or RAD16-like Gene Family AT5G43530 61.350 0.0 1223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g3186 SNF2_N 2.4e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3186 K15505 - gmx:100806677 1841.62