Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu7g3186 | ATGGCCGAAGAAGAACCTTCGATAACGTCACCGCCGGAAGGAACACTCCACAAGTTCCTCTCCCGGAAGGGCAAGCCCGTCATCGCCGCGCAGCCTCTCACGGTGGTCCGCGCCGTCACCAGCACCGGCGGCGCGCGCGTCCTCGCCGCGCCGCCGAACCCGAACGAGGACATGCCGCCGCCGCGGCCGCCACCACcacaagaaggagaagaaggacAAGGCGAAACCGGCTTCGAGGTTTCTCATCCCGCGGCGCCGAATAAAACGCAGCAACGACACAAGTTTACGTTCGACGAGTTTCTCAAGGCCACGAGCACGAAGGTCGCGACCGAAGGCGAGGCTCTGAAGTCAATGGCGCCGccggaagaagaagaagaggaggaagtgGAATCATCACCGGTTCAGCCGGTGCCGAAGGAATCGCGACCGGTTCGACCGGTGCAGAAAGGAGCGGGTATCGATGACCTGGAGGCGGTGGAGGCGCGTAAGTTTGCGGAGAGGAGGAATATTCCGAATCTGGAGGATGGGGAGTTTCCGGAAGAGGCTGGGTGGTTCTTGCTGGGAAGGAAGGTGGAGGTCGCCGTTTCGACGGCAAGAGGGGTGAGGAAGTTGGTGGACAATGAAATCGTTCATTTCAATTTCCCCCTTCCCACGTACTCGAGTAAGTCTCAGTGGATCGTTCGCGTCTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCGAAGACTGTGATTCCGCTTATGCAATCTGGAAGGGTTAAGGTTCGAGGGCGGTGCATTGCTGCGCCAGATAAACTGCAAATGATGCAAGAGATTATGTTTTTAGTGAGctTTTATATTCACCACTCTGTATTTGCTGAGCGTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTGTCTACCCACTTCTTACCCTATTAAAAATGCTAGAGATCAAGCCAAGTCAAAAGGCTGAGTTCACCCCTGAGGATATAGATTCTCGGAAGCGGTTGCTTTATCGGAAGGCTGATCCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAAGGTGGTGAGCCCCTTCCAGAGCAAAATAATGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTTTAGAAATCTATGACCTAAAGGAGAAGGAAGCCCCAAAGGCACTTATGTGTAATCTAAAGCCTTACCAGAAACAAGCACTTTTTTGGATGTCTGAAATAGAAAAGGGAATGGATGTTGAGAGTGCAGAAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACAATTTATGTGAACATATTTACGGGAGAAGCATCAAGGAAATTCCCAAAAGCAACGCAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGGCTTGGAAAGACTGTTATGACAATTGCTCTGATACTCAGTAACCCAGGCAGGGGCAACTCAGAAAACATTGATGTAGAGAATGGAGATGATAATATCAtcacaaacaaaagaaagaatgcTAACACCTTGCATAAAGTTGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAGCCAGATAGTATATCCATATTTGTTCATTATGGTGGCGGAAGAACGAATGATCCCTGGTTGATCTCAGGGCATGATATTGTCTTAACAACGTATGGTGTCCTATCAGCTGCATACAAAAATGATGGAGAGAACAGCATCTACCACAGGGTCCAGTGGTACAGGGTGGTGCTAGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGATTGCCCAGGCTGCTTTTACTTTGTCCTCACACAGCCGCTGGTGTCTAACTGGAACCCCGCTTCAGAATAGCTTGGAAGACCTATACAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGTAACTGGGCATGGTGGCAAAAGTTGGTTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACGAAGGAATCGAAGGATAAGGAAGGAAGGCCTATACTTTTCCTGCCACCAATTGATATTCAATTGATTGCGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGAAGCCCTTTTCGCGAGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTTCACCATTATGCGAATATCCTTGACTTACTAATGCAATTGAGACGGTGTTGTAACCATCCATTTTTGGTAATGGGCGGAAGCGATTCCCAGAAATATGCAGACTTAAGCAGACTCGCAAGAAGATTCCTTCAGTCTAATACTGAATCCCCCTACGAAAGCAATCAAAATGATCCACAGCAACAAGCAGAGTTGAACAAACTCGCAAGTAGACTCCTTCTAAAGTCTGCTTCTTCGCACTCTATCCAACCTCCTGCGTACATTGCCGAGGTTTTGGAGAATATTCAAAAGGGTGACACCGTAGAATGCTCTATATGTATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCACATAAATTTTGTAGAGAATGTCTATTTAGTTGCTGGGGCACCTCAGCGGGTGGCAAATGTCCAATCTGTCGTCAATTGCTCCAGAAAGACGATCTCATTACTTGTCCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCCAAACTATTAGATTTCCTGCAACGTATTCTGAACTCATCAAGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGACCTGTTGGAGAATCCATTGAGGAGGAGGGGAATTGGTTTTTTAAGATATGATGGGAAATTGACTCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATGAAACGAGAGAGAAAAGGGTTTTGTTGATGTCACTAAAGGCTGGTGGTGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGGGTTATTGTTAGAAGATTCATCATGAAGGACACAGTGGAAGATCGATTGCAACTAGTGCAAGCCaggaaacaaaggatgatatcCGGTGCCCTTACCGACGACGAGGTTCGGACTGCTAGGATTCAAGACCTCAAAATGCTATTCAcatga | 3264 | 0.4547 | MAEEEPSITSPPEGTLHKFLSRKGKPVIAAQPLTVVRAVTSTGGARVLAAPPNPNEDMPPPRPPPPQEGEEGQGETGFEVSHPAAPNKTQQRHKFTFDEFLKATSTKVATEGEALKSMAPPEEEEEEEVESSPVQPVPKESRPVRPVQKGAGIDDLEAVEARKFAERRNIPNLEDGEFPEEAGWFLLGRKVEVAVSTARGVRKLVDNEIVHFNFPLPTYSSKSQWIVRVSTKRSGEVGRMPMEWAKTVIPLMQSGRVKVRGRCIAAPDKLQMMQEIMFLVSFYIHHSVFAERVDTSWRLEACGKIDDTVYPLLTLLKMLEIKPSQKAEFTPEDIDSRKRLLYRKADPDEAAALPLIKRRKGGEPLPEQNNDEQALSESALNKLVGALEIYDLKEKEAPKALMCNLKPYQKQALFWMSEIEKGMDVESAERNLHPCWSAYTICKGRTIYVNIFTGEASRKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRGNSENIDVENGDDNIITNKRKNANTLHKVEGGTLIVCPMALLGQWKDELETHSKPDSISIFVHYGGGRTNDPWLISGHDIVLTTYGVLSAAYKNDGENSIYHRVQWYRVVLDEAHNIKAHRSQIAQAAFTLSSHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLVQRPYENGDPRSLKLVKAILRMLMLRRTKESKDKEGRPILFLPPIDIQLIACEQSESERDFYEALFARSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMGGSDSQKYADLSRLARRFLQSNTESPYESNQNDPQQQAELNKLASRLLLKSASSHSIQPPAYIAEVLENIQKGDTVECSICMESPEDPVFTPCAHKFCRECLFSCWGTSAGGKCPICRQLLQKDDLITCPSESPFKVDIKNNVTESSKVSKLLDFLQRILNSSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVIVRRFIMKDTVEDRLQLVQARKQRMISGALTDDEVRTARIQDLKMLFT | 1087 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu7g3186 | 1087 | CDD | DEXDc_SHPRH-like | 405 | 693 | - | - | |
| Ssu7g3186 | 1087 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 351 | 1086 | - | - | |
| Ssu7g3186 | 1087 | MobiDBLite | consensus disorder prediction | 53 | 68 | - | - | |
| Ssu7g3186 | 1087 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 927 | 1087 | IPR001650 | - | |
| Ssu7g3186 | 1087 | MobiDBLite | consensus disorder prediction | 44 | 93 | - | - | |
| Ssu7g3186 | 1087 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 801 | 914 | IPR013083 | - | |
| Ssu7g3186 | 1087 | SMART | helicmild6 | 951 | 1034 | IPR001650 | - | |
| Ssu7g3186 | 1087 | Pfam | SNF2-related domain | 408 | 771 | IPR000330 | GO:0005524|GO:0140658 | |
| Ssu7g3186 | 1087 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 461 | 655 | IPR014001 | - | |
| Ssu7g3186 | 1087 | CDD | SF2_C_SNF | 913 | 1045 | - | - |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information