Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3180 ATGGGGTTGGGTGCAGGGGTAGACCCTGCAACCAATTCTCCATCTTCCACCCTAAACAAACGCCACATGGACCTTTCCATCAACGAAAGAAGCGTTGCTAGAGAAAgacaagaggaagaagaagaagaaagagacaACGGTGATGAACCCAAAGAGGGTGCAGTTGAGGTTGGAACACGCAGGCCCAGAGGGAGACCCCCCGGGTCCAAAAACAAGCCCAAACCCCCCATCTTCGTCACCAGGGACAGCCCAAACTCCCTCAAAAGCCATGTCATGGAGGTTGCTGGTGGTGCTGACGTGGCGGAAAGTGTGGCCCAGTTCGCACGGAGGCGCCAGCGTGGGGTGTGTGTCCTCAGTGGGAGCGGTTCCGTGGCCAACGTTACTCTCCGGCAACCTGCGGCGCCGGGGGCAGTTGTCGCACTTCATGGAAGGTTTGAGATTCTGTCCCTCACTGGGGCGTTTTTACCTGGTCCTGCTCCGCCAGGAGCTACAGGACTTACCGTGTATCTCGCTGGCGGACAGGGCCAGGTAGTGGGAGGGAGTGTTGTGGGGTCCCTTGTGGCAGCTGGACCTGTGATGGTGATTGCTGCCACTTTTGCTAATGCTACCTATGAGAGGTTGCCACTCGAGGAGGAAGATGATGACGGTGGTGGTAGCGTGCAAGGAGGGAGCGCCTTAGGAGGGTCTCCTCCCGGTAttggtagtagtggtggtggtggtagtagtggGGGCCACTTGCAAGGTGGGATTCCTGATCCTTCTTCTTTGCCTTTGTATAATCTCCCACCAAATCTTCTCCCCAATGGAGGACAAGTGGGGCATGAAGCCTTTGCTTGGGCTCATGGCCATGGAAGGCCACCTTTCTGA 867 0.5329 MGLGAGVDPATNSPSSTLNKRHMDLSINERSVARERQEEEEEERDNGDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLKSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEEEDDDGGGSVQGGSALGGSPPGIGSSGGGGSSGGHLQGGIPDPSSLPLYNLPPNLLPNGGQVGHEAFAWAHGHGRPPF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3180 288 ProSiteProfiles PPC domain profile profile. 84 221 IPR005175 -
Ssu7g3180 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 200 IPR005175 -
Ssu7g3180 288 PIRSF ESCAROLA 5 288 IPR014476 GO:0003680
Ssu7g3180 288 MobiDBLite consensus disorder prediction 1 85 - -
Ssu7g3180 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 287 IPR014476 GO:0003680
Ssu7g3180 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 26 287 - -
Ssu7g3180 288 Gene3D - 88 214 - -
Ssu7g3180 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 212 - -
Ssu7g3180 288 MobiDBLite consensus disorder prediction 210 254 - -
Ssu7g3180 288 CDD DUF296 88 171 IPR005175 -
Ssu7g3180 288 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3180 Ssu-Chr7 75303506 75304372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3180 50 288 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 68.724 1.06e-98 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3180 - - gmx:102663643 343.199