Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3179 ATGTTAAAGGCAGTGTCATTTGAACTGTTGTTAATTTGCTTACTCCTCCTCACATGTGTGTGTGCATCAGATAATGGGATTCCCAGATGTAACTGTGATGATGAGTCCAGCCTGTGGACTATTGAGACCATTCTGGAGTGCCAGAGAGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTGCTTTACTTTGTTAGTTGTTCAAACTTTCCATTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCACTTACTATCTTCAAAATTCTCACTGCCTTGGTGTCATGTGCCACTTCCATAACCCTCCTCACTTTGATCCCTATGCTGTTGAAAGTGAAGGTTAGAGAATTGATGCTGAAGAAAAAGACCTGGGATCTTGGGAGGGAGGTTGGAATCATAATGAAACAAAAGGAGGCTGCAAGGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCGTTAGATAGGCATAAGATTCTGTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAAAACTGTGCGGTGTGGATGCCAAATGTTGAGAAACCTGAGATGAACCTTACACATGAATTGGATGGGAGGAATATTAACTGTTCTATACCCATAACTGATCCAGATGTTGTCAGAATTAAGGGAAGTGATGAAGTAAACATAATTGATTCTGATTCAGTACTTGCCACTGCCAGCAGTGGGGTTTCTGGTGTGGCAGGACCAGTGGCTGCAATCCGAATGCCAATGCTTCGGGTTTGCAATTTCAAAGGGGGAACGCCAGAGCTAAGGCAGACGTGTTATGCCATATTGGTTTTGATTCTTCCTAGCGCGGAGCCTAGATTGTGGAGCACTCAAGAGCTGGAGATCATTAAGGTTGTTGCTGATCAGGTGGCTGTGGCTTTGTCTCATGCCGCGATTCTTGAAGAGTCCCAGCTCATGAGGGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAAGTGGAAAGGATGAATGCTATGATGGCGAGCCAGGCGAGAGCTTCTTTTCAGAAGGTCATGAGTAATGGAATGAGAAGGCCAATGCACTCAATTTTGGGGTTGCTATCAATGATGCAAGATGAGAATTTAAAGAGTGAACAGAAACTTATTGTGGATTCAATGCTAAGGACCAGCAATGTGTTATCGAACTTGATAAATGATGCCATGGACTACTCAGCAAGGGATGATGGAAGGTTTCCTTTGGATATGAAACCTATTGGATTGCATGCCATGGTAAAGGAGGCAGCTTGCCTTGCCAAGTGTCTGTGCATTTATAGGGGCCTTGGTTTTGTGGTTGATGTTGATAAGTCTTTGCCAGACAATGTTATAGGTGATGAAAAGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAATGCATTAAATGGTAACCATGGGGGAGGGGTTCTTGTATTTCGAGTTTTTGCTGAAACTGGAAGTCAGGGAAGGAATGACCAGGGATGGACAACCTGGAGACCAAGCTCTTCTAGTGGGGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAATACTGGTGATCCTGAATTGGAGAGCTCAGTTCCTTCAGGGCAGCTTGCAGGTACAAAGTGTGCTAGTGATAGGATTGAGGGAAGATTGAGCTTTAGCATTTGCAAGAGGATAATCCAGTTGATGCAAGGGAGCATATGCTTATTACCAAATGATCAAGGTTTTCCTCAAGTCATGGCCCTTTTTCTTCGGTTTCAATTGCGGCGGTCTATTTCCGTAGCCATCCCTGAACCTGGGGAAAATTCAGAGCCATCTAATTCGAATTCTTTCTTCAGAGGTCTGCAAGTCTTGTTGGCCGACAACGACGATGTAAATAGAGCAGTAACCCAAAGGTTGCTTCAAAAACTAGGTTGTGTTGTAACTACTGTTTCTTCAGGATTTGAATGCCTTAGTGTTATTGGACCTACTGGATCTTCCTTTCAAGTCATTCTTTTGGATCTTCACATGCCTGAGCTAGATGGATTTGAAGTTGCAACAAGGATTCGCAAGTTTAGAAGCCGAAATTGGCCTTTGATTGTTGCCTTGACTGCAAGCACAGAAGATTTGTGGGAAAGATGCATGCACATTGGCATGAATGGAGTCATAAGAAAGCCAGTTTTGTTGCATGGAATTGCTGGTGAACTCAGAAGAATCCTAATGCAGGGAAATAGTGTCATGTGA 2292 0.4354 MLKAVSFELLLICLLLLTCVCASDNGIPRCNCDDESSLWTIETILECQRVGDFLIAVAYFSIPIELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVALTIFKILTALVSCATSITLLTLIPMLLKVKVRELMLKKKTWDLGREVGIIMKQKEAARHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKPEMNLTHELDGRNINCSIPITDPDVVRIKGSDEVNIIDSDSVLATASSGVSGVAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPSAEPRLWSTQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQVERMNAMMASQARASFQKVMSNGMRRPMHSILGLLSMMQDENLKSEQKLIVDSMLRTSNVLSNLINDAMDYSARDDGRFPLDMKPIGLHAMVKEAACLAKCLCIYRGLGFVVDVDKSLPDNVIGDEKRVFQVILHMVGNALNGNHGGGVLVFRVFAETGSQGRNDQGWTTWRPSSSSGDVNIRFEIGINSNTGDPELESSVPSGQLAGTKCASDRIEGRLSFSICKRIIQLMQGSICLLPNDQGFPQVMALFLRFQLRRSISVAIPEPGENSEPSNSNSFFRGLQVLLADNDDVNRAVTQRLLQKLGCVVTTVSSGFECLSVIGPTGSSFQVILLDLHMPELDGFEVATRIRKFRSRNWPLIVALTASTEDLWERCMHIGMNGVIRKPVLLHGIAGELRRILMQGNSVM 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3179 763 Pfam Response regulator receiver domain 640 743 IPR001789 GO:0000160
Ssu7g3179 763 Gene3D - 621 755 - -
Ssu7g3179 763 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Ssu7g3179 763 PANTHER ETHYLENE RESPONSE SENSOR 2 12 760 - -
Ssu7g3179 763 ProSiteProfiles Histidine kinase domain profile. 373 590 IPR005467 -
Ssu7g3179 763 ProSiteProfiles Response regulatory domain profile. 639 756 IPR001789 GO:0000160
Ssu7g3179 763 Coils Coil 336 363 - -
Ssu7g3179 763 SMART gaf_1 184 340 IPR003018 GO:0005515
Ssu7g3179 763 CDD HATPase_ETR2_ERS2-EIN4-like 472 607 - -
Ssu7g3179 763 SUPERFAMILY CheY-like 635 755 IPR011006 -
Ssu7g3179 763 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 508 IPR036890 -
Ssu7g3179 763 SUPERFAMILY GAF domain-like 187 333 - -
Ssu7g3179 763 PIRSF Ethylen_sen_hybr_HK 1 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Ssu7g3179 763 CDD REC_ETR-like 638 752 - -
Ssu7g3179 763 CDD HisKA 364 426 IPR003661 GO:0000155|GO:0007165
Ssu7g3179 763 Gene3D - 430 606 IPR036890 -
Ssu7g3179 763 SMART REC_2 638 756 IPR001789 GO:0000160
Ssu7g3179 763 Gene3D - 332 429 - -
Ssu7g3179 763 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 12 760 - -
Ssu7g3179 763 Gene3D - 162 331 IPR029016 -
Ssu7g3179 763 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 356 432 IPR036097 GO:0000155|GO:0007165
Ssu7g3179 763 Pfam His Kinase A (phospho-acceptor) domain 370 431 IPR003661 GO:0000155|GO:0007165
Ssu7g3179 763 Pfam GAF domain 184 330 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3179 Ssu-Chr7 75157732 75160626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3179 22 756 Miscellaneous Gene Families AT3G04580 57.987 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g3179 GAF 7.1e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3179 K14509 - gmx:100802948 1365.52