Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3170 ATGTCAACTCAGAAAGTTGTCAGAGAGAGACAAAGATCAGCTCAACTGACCGAGACTCCAACTCAATCACCTGCGTTCTACCTCGGTCAAGGATGGAGGAAGGCATGGTATTGGATATGGTGGCCTCAGGAGATGAGGGAAGGGTATGTTCTCAAGGGTGGAATAGAACATCAGATGCCCTTTAGACGAAGCCGCGGTGATGAAGGATCAGAGGCTTCTAGTGAAGAACGTGATGATCAACAAGAAGTTCAACATGACTCTGCAGGGTCCAAACGATCTTATGATTGCACATTCTGTAAGAGGGGCTTCAATAACGCCAGGGCTTTAGGAGGCCACATGAATATCCACAGGAAAGAGAGAACCAAGGTCAAGCAAGTCACACCCATTTCTTCACCACTCAACAACTTTACCAATGAAGAATCCATGGCCTCTCCTTTTGTTCCACAAGTTTCAAGCCAGCCCTCAAGGTACTACTCCATTTTGGACACTCCAAGGAACCATGACATGCATTTTCAACCACCAGAACCTAGCCCTAGAAACCACCCACCTTCATTTACTTTTCAACATGACTTTCTTAACCCAAGGTTGTCTCGGTCATTGACAAGGAACCAAGAGCTGGTGGGTGCCAATTTGAGTCTCCAAATTGGTTCTTCTAGTCATGTGGATACCGATCAAGTTAGGAGAGGAATTGAGAAAGATGGTGACCGGGTGGACTTAGAACTCAGGCTTGGTCATGATCCATACTCAAACTACTAA 756 0.4603 MSTQKVVRERQRSAQLTETPTQSPAFYLGQGWRKAWYWIWWPQEMREGYVLKGGIEHQMPFRRSRGDEGSEASSEERDDQQEVQHDSAGSKRSYDCTFCKRGFNNARALGGHMNIHRKERTKVKQVTPISSPLNNFTNEESMASPFVPQVSSQPSRYYSILDTPRNHDMHFQPPEPSPRNHPPSFTFQHDFLNPRLSRSLTRNQELVGANLSLQIGSSSHVDTDQVRRGIEKDGDRVDLELRLGHDPYSNY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3170 251 MobiDBLite consensus disorder prediction 60 92 - -
Ssu7g3170 251 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 72 247 - -
Ssu7g3170 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Ssu7g3170 251 MobiDBLite consensus disorder prediction 1 20 - -
Ssu7g3170 251 MobiDBLite consensus disorder prediction 168 188 - -
Ssu7g3170 251 MobiDBLite consensus disorder prediction 60 89 - -
Ssu7g3170 251 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Ssu7g3170 251 PANTHER OS07G0101800 PROTEIN 72 247 - -
Ssu7g3170 251 SUPERFAMILY beta-beta-alpha zinc fingers 91 121 IPR036236 -
Ssu7g3170 251 Gene3D Classic Zinc Finger 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3170 Ssu-Chr7 74846769 74848974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3170 87 248 C2H2 Transcription Factor Family AT3G53820 30.247 5.48e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g3170 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3170 - - mtr:MTR_1g044225 201.06