Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3158 ATGTTGCAGGATGTTATCCACCCCCCAACACCGGCTGAGCAACTCCCCATTGATGAAATTTCAAGCCCAATTAGTGCTCGAATTTTCGAACTTTGTGACCCTGAGTTTTTCCGAGAGACACTGCAAAATTCCGAGGTTACCTCCAGCTCAAACTGTTGCCATGAAGAGAAGTCCTCATATGCCACAAACATATCTCCACCTTTAGATGTAGACAACAAGAAGATCAATATCAATAGCAATAGCAACATAGTCACCACCTCATCTAGTACTACTACAACCAGCATCGCGATCACtaccaacatcaacaacaacaacaataacaacgcAACAAACAGCAATAACCTCTCTATCTTCTTTGACTCTCAAGAAGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATCTCCATCTTTTGTTGTTCCACCACTTCTCCCAATCACAACTCAGCAGGGGCAGTTTGATTTCTCTTCAGCTCAGCCACAGGTGCAACTATCAGCAGCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACCAACCCTGTGGTTGCACCCCTTATGGGGGCTCCATTACCATCtgtttttgatgatgattgcATATCTTCCATCCCTTCTTACGTGCCTCTCAACCCTTCATCTCCCTCTTGCTCTTATCTCAATCCTGGCATAGGAGTGTACATGCCTCCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTTCTGGGTTGTTTGCTGGGAACATTCTACTGGAGTCTGAACTGCAGGCACAAGAACTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGATGTTTAACCCCCCAGACCTTCAGGCACTTGGGACTGAAAGTCAGAAACTTGTAACTGGGGCTGGGAGTTCTGCCACTTTGGCACCAGAAATCTCACACTTGGAGGACTCTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGaagaagagaaatgaaagaaatttcaGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCCGATAGCAGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAGTGCCATAGGCAAGGTAGTAGCAATCatgaagaagatgatgaagaaATAATTGTGAAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCCCACATCAGTGGGATTAATTTTGGCAGGGCTCTTTCCCGTTCCGGGTTTGATGGTTTGAGGAAACTGAATAATTGGGGTCCAAATAATATACCAATAAGTGAATCATTGAAGGTTAGGCTTCATTCTAAACCATGCTTCATCAACTATATCTTCGAGACGCTTGCGCAGGAAGCGTCGCGTCTCGCGAGGTACAACAAGAAGCCAACCATTATCTCCAGGGAGATTCAGACCGCAGTTAAGTCGAAGAATGAGGATGGTAGGAAGCCAAGCATATGGGATACCTTCGCCCGTGCTGGAAATGGGAATATGTATGAAGGTGATGGAGATGTTGCATGTGATCAATATCACAAATATAAGAGAGGTTCTTATTGTAATGGGTGGGAGTTGACTGCTTGTTTGGAGTACGGTGGAGCTGCAAGCTCGTGGTCAATGGGGCTGGCTCAGTCTCAAGTTAGCGGTGGGAATGGTGTGTACTCCGCAATACTGCTGATTGAACCTTCAATTTCGGTTCCCATTAAAAGATCACTATCAGATATGTCACATCTCTCCTCCGAATCTGCATCTCCAAATCTTAAGAGGTCTATGTCCTCATTGAAATTTTGA 1824 0.4271 MLQDVIHPPTPAEQLPIDEISSPISARIFELCDPEFFRETLQNSEVTSSSNCCHEEKSSYATNISPPLDVDNKKININSNSNIVTTSSSTTTTSIAITTNINNNNNNNATNSNNLSIFFDSQEEIDNDISASIDFSSSPSFVVPPLLPITTQQGQFDFSSAQPQVQLSAAGSVLKGLSQYPTNPVVAPLMGAPLPSVFDDDCISSIPSYVPLNPSSPSCSYLNPGIGVYMPPPGSLNTALSADSSGLFAGNILLESELQAQELDYQGENGGIYCTDSIQRMFNPPDLQALGTESQKLVTGAGSSATLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGECHRQGSSNHEEDDEEIIVKEDDMVDSSDIFAHISGINFGRALSRSGFDGLRKLNNWGPNNIPISESLKVRLHSKPCFINYIFETLAQEASRLARYNKKPTIISREIQTAVKSKNEDGRKPSIWDTFARAGNGNMYEGDGDVACDQYHKYKRGSYCNGWELTACLEYGGAASSWSMGLAQSQVSGGNGVYSAILLIEPSISVPIKRSLSDMSHLSSESASPNLKRSMSSLKF 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3158 607 Gene3D Histone, subunit A 450 485 IPR009072 GO:0046982
Ssu7g3158 607 Gene3D Glycosidases 486 535 - -
Ssu7g3158 607 SUPERFAMILY Histone-fold 453 486 IPR009072 GO:0046982
Ssu7g3158 607 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 413 - -
Ssu7g3158 607 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515
Ssu7g3158 607 Pfam Glycosyl hydrolase family 1 489 526 IPR001360 GO:0004553|GO:0005975
Ssu7g3158 607 PANTHER CCT MOTIF FAMILY PROTEIN 17 413 - -
Ssu7g3158 607 SUPERFAMILY (Trans)glycosidases 490 527 IPR017853 -
Ssu7g3158 607 Pfam CCT motif 329 371 IPR010402 GO:0005515
Ssu7g3158 607 PRINTS Histone H2B signature 444 464 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g3158 607 PRINTS Histone H2B signature 466 483 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3158 Ssu-Chr7 74583319 74594491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3158 308 376 C2C2-CO-like Transcription Factor Family AT5G24930 40.580 1.33e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g3158 Glyco_hydro_1 9.9e-08 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3158 - - gmx:100793417 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3158 7 74583319 74594491 Ssu7g3158 7 74583319 74594491 ECH