Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3155 atgtatatattttttttgcgtGTGTTACTGTGTGCGCAGTTCGTAGCCGATGGCGTGTTCTTCGCGGAGCTGAACGAGGTTCTGACGCGAGAGCTGGCGGAGGACGGTTACTCCGGCGTGGAAGTCAGGGTGACGCCGATGCGCACCGAAATCATCATCCGTGCCACGCGAACCCAAGCCGTGCTCGGTGAGAAGGGAAGGAGAATCCGGGAACTTACTTCGGTGGTTCAGAAGAGGTTCAAGTTTCCTGAGAACAGCGTTGAACTCTATGCCGAAAAAGTCAACAATAGGGGTCTTTGCGCAATTGCACAAGCTGAGTCTCTTCGCTACAAGCTCCTTGGTGGACTTGCCGTGCGCagGGCCTGCTATGGTGTTTTGAGGTTTGTTATGGAGAGTGGTGCTAAGGGATGCGAGGTGATTGTCAGTGGAAAATTGAGAGCCCAAAGAGCCAAATCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGGCAACCTGTCAAGGATTACATTGATTCTGCAGTGAGACACGTGCTCCTTAGACAGGGTGTTCTTGGCATTAAGGTGAAGATTATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATGCTCCAAAGGAGGAAGAGGAATACATCCGGCCTGCTGCAGTGTTGGCTAATGATATTGAGGTCCCTGTTGCTTGA 717 0.4937 MYIFFLRVLLCAQFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHAPKEEEEYIRPAAVLANDIEVPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3155 238 Pfam Ribosomal protein S3, C-terminal domain 109 191 IPR001351 GO:0003735|GO:0006412
Ssu7g3155 238 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 13 235 - -
Ssu7g3155 238 ProSitePatterns Ribosomal protein S3 signature. 150 186 IPR018280 -
Ssu7g3155 238 Gene3D - 96 222 IPR036419 -
Ssu7g3155 238 TIGRFAM uS3_euk_arch: ribosomal protein uS3 13 213 IPR005703 GO:0003735|GO:0006412|GO:0015935
Ssu7g3155 238 ProSiteProfiles Type-2 KH domain profile. 24 95 IPR004044 GO:0003723
Ssu7g3155 238 CDD 40S_S3_KH 18 98 - -
Ssu7g3155 238 Gene3D - 9 94 IPR015946 -
Ssu7g3155 238 SUPERFAMILY Ribosomal protein S3 C-terminal domain 96 194 IPR036419 -
Ssu7g3155 238 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 13 102 IPR009019 GO:0003723
Ssu7g3155 238 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 13 235 - -
Ssu7g3155 238 Pfam KH domain 23 96 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3155 Ssu-Chr7 74485641 74487412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3155 13 238 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.168 9.41e-146 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3155 K02985 - gmx:100795581 436.032