Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3150 ATGGCTGCCACTGCTGCAGGCATAGCCTCCTTGTTTTCTTCTTCCATCAACGCTGTCAAATGTCTTCGTTCCAAGAACTGCTCCATCATCGATCCCCTCATGACAACAGTGCCCTCAAACCGCATGTTTGCATCTGTGTCACACTTGGAACTTTTGTCCATTGGGGGCACCATTTCGCACAAGTTGTGGGGGCCTAGAATTTATGCTGCTGTTGCACAAGAAGAGGTTGTTGTGGCTGATGAGGTAGATGATGCTGGTTTAGTTGAGGAACAGAAAGTGGAGGAGAATGAAAGAGAAGTGGTGGCAGAACAAGACTCTGATGAATCCTCTGCCAACACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAAAACTTGCAGGGCTAATTCAGGATTATGGTAGCGCAGAACTAATTGAGgttCTTTACGACAGGGAAACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCATGGGCAGAACCTTAAGGGTGAACTTCTCTaacaaaccaaaaccaaaagaacCATTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTGACAAATGAGATTTTGATACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTATATGATGGGGAAACCGGAAGGTCCCGTGGCTATGGCTTTGTTTGCTATTCAACAAAAGCAGAGATGGAATCTGCCCTTGCAGCCTTGAATGATGTGGAGCTAGAAGGACGGGCTATGCGGGTAAGCTTGGCTCAAGGAAAACGTTCACAAGGTTAA 864 0.4329 MAATAAGIASLFSSSINAVKCLRSKNCSIIDPLMTTVPSNRMFASVSHLELLSIGGTISHKLWGPRIYAAVAQEEVVVADEVDDAGLVEEQKVEENEREVVAEQDSDESSANTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRETGKSRGFAFVTMSCIEDCNAVIENLDGKEFMGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTNEILIQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMESALAALNDVELEGRAMRVSLAQGKRSQG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3150 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Ssu7g3150 287 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 195 285 - -
Ssu7g3150 287 SUPERFAMILY RNA-binding domain, RBD 105 196 IPR035979 GO:0003676
Ssu7g3150 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 185 IPR000504 GO:0003723
Ssu7g3150 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 275 IPR000504 GO:0003723
Ssu7g3150 287 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 86 152 - -
Ssu7g3150 287 PANTHER TRANSFORMER-2-RELATED 195 285 - -
Ssu7g3150 287 SMART rrm1_1 114 187 IPR000504 GO:0003723
Ssu7g3150 287 SMART rrm1_1 205 278 IPR000504 GO:0003723
Ssu7g3150 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Ssu7g3150 287 Gene3D - 197 287 IPR012677 -
Ssu7g3150 287 Gene3D - 72 196 IPR012677 -
Ssu7g3150 287 SUPERFAMILY RNA-binding domain, RBD 197 284 IPR035979 GO:0003676
Ssu7g3150 287 PANTHER TRANSFORMER-2-RELATED 146 189 - -
Ssu7g3150 287 PANTHER TRANSFORMER-2-RELATED 86 152 - -
Ssu7g3150 287 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3150 Ssu-Chr7 74400898 74404270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3150 69 283 Eukaryotic Initiation Factors Gene Family AT3G16380 30.213 3.24e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3150 - - gmx:100820203 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3150 7 74400898 74404270 Ssu7g3150 7 74400898 74404270 ECH