Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3146 ATGTATTGGGGGAAAGTTATGGCAGGCCATATGGGGCGGGGTGTCATACAGGAGGAGGTATGGAGGAAGGGACCTTGGACCGCTGAAGAGGACAGATTGCTTGTTGAGTATGTCAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGACAGATAACACCACAGGAAGAGAGCATAATTCTAGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGGAGAACTGAcaatgagataaaaaattattggaggACCCATTTcaagaaaaaggcaaaaagtgCCTCTGATGCAGCAGAGAAGGCTAGAAATAGACACCTGAGGAAGCAGCAATTTcaccagcaacaacaacaacaacagttgCTGCAGCAGCaggcacaacaacaacaacaacaactacaacTCAACTTTGACATGAAAGGCATCATGGCCTTGCTTGAGGACAACAGCCATAGAGCACCTTATGTATCTCAAGCTAGACAGGACATGGTCAACATGCAGCCCAACACTACAGAAGAGCAAGGATACTTGTACTCTATGCTCAGTGGCAACTCCTCTGCATCAGAGACCTCAGCTGAAGAAATTTTGTGGGATGGCCTGTGGAACTTAGATGATTTTCACGGCAATTTCAGTGTAGCTAGTGCAGCAAGCAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAG 789 0.417 MYWGKVMAGHMGRGVIQEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSASDAAEKARNRHLRKQQFHQQQQQQQLLQQQAQQQQQQLQLNFDMKGIMALLEDNSHRAPYVSQARQDMVNMQPNTTEEQGYLYSMLSGNSSASETSAEEILWDGLWNLDDFHGNFSVASAASKAGLYNLVAPFC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3146 262 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Ssu7g3146 262 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Ssu7g3146 262 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Ssu7g3146 262 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Ssu7g3146 262 MobiDBLite consensus disorder prediction 124 138 - -
Ssu7g3146 262 Gene3D - 80 124 - -
Ssu7g3146 262 SMART sant 75 123 IPR001005 -
Ssu7g3146 262 SMART sant 22 72 IPR001005 -
Ssu7g3146 262 CDD SANT 80 121 IPR001005 -
Ssu7g3146 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Ssu7g3146 262 MobiDBLite consensus disorder prediction 124 151 - -
Ssu7g3146 262 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Ssu7g3146 262 Gene3D - 23 75 - -
Ssu7g3146 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Ssu7g3146 262 Coils Coil 145 165 - -
Ssu7g3146 262 PANTHER MYB TRANSCRIPTION FACTOR 4 255 - -
Ssu7g3146 262 CDD SANT 25 70 IPR001005 -
Ssu7g3146 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 255 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3146 Ssu-Chr7 74284803 74286205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3146 18 262 MYB Transcription Factor Family AT3G24310 56.705 8.94e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g3146 Myb_DNA-binding 9.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3146 K09422 - gmx:100795981 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3146 7 74284803 74286205 Ssu7g3146 7 74284803 74286205 ECH