Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3099 ATGGAGGCCATTGGTTCTATGGATGACCTCTTGAATTTTTCATCAGACATAGGTGAGGAAGATGATGATAATGACAAACCTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGTGGTGATCCACCATTGTTTAATCCATTGGACCTGGATGATCCAAACCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTGCTGTTGAAACGTTTGTTGACATATCATGTATTCAACCTGACACTTCCAAGAACCAAAAAACAGCACCACTACTTGAGTACAGCACAAGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTATGATCACCTGAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCGTCGCCCTGGCATTGCTGACAACTCTAGTCAGCAAGTCTGGTGGGGACAACCAAGTAATGAAGTTTCCAATGCAGAAGAAGGGATAAAAATCTCACCCATTGGGAGGCAATGTCAGCACTGTGGAGCTGAAGAAACTCCACAGTGGCGGGCAGGTCCCCTTGGACCAAAAACACTTTGTAATGCATGTGGGGTTAGGTACAAGTCTGGGCGGCTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTTTAGTAGTGATTTGCATTCTAATTCCCACAGGAAGATAATAGAGATGAGGAGGCATAAGCAAATGGGAATGGAATAA 738 0.4485 MEAIGSMDDLLNFSSDIGEEDDDNDKPRKACPSLNSKCGDPPLFNPLDLDDPNHSFSEFAEEELEWLSNKDAFPAVETFVDISCIQPDTSKNQKTAPLLEYSTSSSNSNNSTNSISLLNSYDHLKVPVRARSKSRSRRRPGIADNSSQQVWWGQPSNEVSNAEEGIKISPIGRQCQHCGAEETPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFSSDLHSNSHRKIIEMRRHKQMGME 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3099 245 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Ssu7g3099 245 Gene3D - 169 220 IPR013088 GO:0006355|GO:0008270
Ssu7g3099 245 MobiDBLite consensus disorder prediction 128 154 - -
Ssu7g3099 245 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Ssu7g3099 245 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Ssu7g3099 245 PANTHER GATA TRANSCRIPTION FACTOR 1 7 241 - -
Ssu7g3099 245 CDD ZnF_GATA 174 222 IPR000679 GO:0006355|GO:0043565
Ssu7g3099 245 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Ssu7g3099 245 PANTHER GATA TRANSCRIPTION FACTOR 7 241 - -
Ssu7g3099 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 232 - -
Ssu7g3099 245 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3099 Ssu-Chr7 72333300 72334848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3099 1 243 C2C2-Gata Transcription Factor Family AT3G24050 40.580 7.62e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu7g3099 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3099 - - gmx:100784527 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3099 7 72333300 72334848 Ssu7g3099 7 72333300 72334848 ECH