Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3096 ATGGGAAAGCGATTTTGCGAGAAAGAGTGTGCATTGTCTAATGGAAATTGTAATAGTAGTCATCATACTCATCCGGGACGAGTATGGGGCATTCTTCATGTTATGAAATACCATCATTGGCGCCATGTCAAGAGAAGGCTCACACACAAGAGGCACGGAGGTGGAAGACCTGATTCAAGAGCTGAAATTCCAGGAACTTCTGGTGATTCTGGGGTTCACTCTATGCCAGAACATTATAAGCCACATACAGCATTGTCTAATGTTAAAGAAAAGCTGGTACACTCCCCTCCACCAGCCAAACTTTCAATCAAATCCCGAATAAGATCACTTCTTCACGAAGATATATACAGAAGGAAGGGTCGACACAAGAGAAGCTCAACCTGCCCTGCTAAGTCACAACTAACTCGTGCTGATTCTGTTCATAACTTGGAGTTTGATCCACTTAGTGAATTGTTGCTAACTGTTGAGAGTCCTGAACCAGTCTTAGAAACCTTTCAAAACCATCTTGCTGCTGGCACATTGGATGTACTGTCACCAGTTTTCTCTGAGAAACCAATTGCCAACAATGACAAATGTGTAGATTGTGGCACAATGTTTTCTAGCGACATTTTGGAACATAGCAAGATTCATAAGCACTTGAGCTCTCCTTGTCAAGGGGGGCCTGAAGAGAAGTTGATGAATGCTCAGATACTTACAACTGATGCTTCACCCCATCTTTTCAAGGACTTTCTTGATGCATTAGATGTGATCAACACAAACAAGGACTTCctattagaatatatacaggATCGGGGCTCTCCTTTGCCATTGCATCAACAATCTTTCAATGGTAAATCGAGACGAGCCAAATCTCTCTCATTTCCTGTATCTGCTTCATCATCAGGAAACCAAGATTCTGATCCAGGTCAACTCATAAACCAAATGGTAGATGACTGGTTCAATGCAGAAGAAGAAAAGTTACAAATTCAAAGTAACAAGCAAAATGCATCCATGCATGAGTCTGCAGAAGATCTTCACCAACAGTCCATACCACCAGGTTCTTCACATCAATGGGGTGAAAGAGATTATAATTCTTCATCAGTTTCATCCCAGGTTCCCAACAATATGAAAACTAGGCATTTCAGGGATCTTAGAAAGAAGATGAAGCACATAATTGAAGAAGGAAGAAATGAAAAGTATCGCATTACCATGGATGCTATACTTGACAAAATTCCTAGTGGAAAGAAGCTTACCAAAAATGTAAAGAAGTTGATCCATGACCAATCCAAAGACCCCACAATTAATGGGGAAAGTGAAGACAGTGCAACAAGTGGTGTTGGTAGCCGTCTCTCTTCTAATTCCTTCAACAAGAGTCAACCATTATCCATGAGGAATtcatctctaaaagattcagtTGGTAGATATTCTCAGTTGTATCAGACTTGTTTTAATAGTGAAAACAAGTATCCCAAGACTGAGAACTTGAGATTGAGAACAGAAGAGAGAAATTCTATGTTGAAGACCCCAAAATCCTTTAAAAGGTTTCTTTCAATgcctaatttaaaatcttacttTCACCAGAATGAGGAGCCTTCTGTTATTTTATCCCCCCAGAATTCAATCAAGAAATCGGGAGATAGAACCTCAAGCACAAATGTCATTGATCAGCAGCAAAGAAGGTTTGACCATAGTGATGactcaaagaataaaaattttccaCCTACACTTACTGATAATACAAATCAAGAAAGCAGCTTGAATGCTGAACAAAAGCAACTTCTTGTCAGGAGTGCTTCAAAATCAGGATTAGATTTTAGTAATGAGACAAACGCAGATAAGAACATAGGAATTGAAAGTTTAGGTAACTTGAGAGACATTGAACATGACATTGGAGCTGAAACAGAATCTACTACTATGCCAGCGGAAGCAAACTCAGTCTTCTCTTCTGATACCAGCTTCCTAGATGTTACATTTGATCTTGAGAACTTAAACATACTGGAAGAAGAATCAGATTCAGAATTAAAGTCAGGGCAAGATGATGGATTGGATAATACGGCTGAGCAACAAGAGGCTAAAGATCACCCTGAGGTGgttgagaattttcaaaagctTGGAACTGTAAGCAAGCGCTTCAACTATGAGATTCCATGTATTGAAGTGGATGCAAGTAATGAAGCTGCATTTAATTATGTGAGAAAGGTTTTAGAGCTCTCTGGGTTCACTGGCCATGATTCCCTTGGGATATGGTATTCTGATAACCTGCCAGTTGATCCTTCAGTGTTTGAAGAATTGGAGGGGTGCTTGCTTCTGGATCCTGATTGTTCTGGTAATAGTGGTGAAGATGGAGAATGTAATCATCTGCTTCTGTTTGATATAATCAATGAGGGGTTGTGGGAGATTTTTGGTAGATCATACAACTATTATCCCAGACCCTTGTCTTCTCTCTCTCATGTTCATCCATTGCCAGCAGGAGAAAATGTTCTCCATAAAGTGTGGACACTTATTAGTTGGTATCTGAACTCAACAACTGAGCTTTACCCATCATTGGATTATTATGTGAGCAAAGATCTTGCAAAATATGATGGGTGGATGAATCTCCAATTTGATTCTGAATGTGTGGGGCTTGAGCTAGATGACTTGATTTTTGATGATCTTTTGGAGGAAATTTTCTGCGCCTAG 2658 0.3868 MGKRFCEKECALSNGNCNSSHHTHPGRVWGILHVMKYHHWRHVKRRLTHKRHGGGRPDSRAEIPGTSGDSGVHSMPEHYKPHTALSNVKEKLVHSPPPAKLSIKSRIRSLLHEDIYRRKGRHKRSSTCPAKSQLTRADSVHNLEFDPLSELLLTVESPEPVLETFQNHLAAGTLDVLSPVFSEKPIANNDKCVDCGTMFSSDILEHSKIHKHLSSPCQGGPEEKLMNAQILTTDASPHLFKDFLDALDVINTNKDFLLEYIQDRGSPLPLHQQSFNGKSRRAKSLSFPVSASSSGNQDSDPGQLINQMVDDWFNAEEEKLQIQSNKQNASMHESAEDLHQQSIPPGSSHQWGERDYNSSSVSSQVPNNMKTRHFRDLRKKMKHIIEEGRNEKYRITMDAILDKIPSGKKLTKNVKKLIHDQSKDPTINGESEDSATSGVGSRLSSNSFNKSQPLSMRNSSLKDSVGRYSQLYQTCFNSENKYPKTENLRLRTEERNSMLKTPKSFKRFLSMPNLKSYFHQNEEPSVILSPQNSIKKSGDRTSSTNVIDQQQRRFDHSDDSKNKNFPPTLTDNTNQESSLNAEQKQLLVRSASKSGLDFSNETNADKNIGIESLGNLRDIEHDIGAETESTTMPAEANSVFSSDTSFLDVTFDLENLNILEEESDSELKSGQDDGLDNTAEQQEAKDHPEVVENFQKLGTVSKRFNYEIPCIEVDASNEAAFNYVRKVLELSGFTGHDSLGIWYSDNLPVDPSVFEELEGCLLLDPDCSGNSGEDGECNHLLLFDIINEGLWEIFGRSYNYYPRPLSSLSHVHPLPAGENVLHKVWTLISWYLNSTTELYPSLDYYVSKDLAKYDGWMNLQFDSECVGLELDDLIFDDLLEEIFCA 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3096 885 MobiDBLite consensus disorder prediction 528 550 - -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 563 579 - -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 420 462 - -
Ssu7g3096 885 Pfam Protein of unknown function (DUF3741) 223 266 IPR022212 -
Ssu7g3096 885 PANTHER PROTEIN TRM32 1 884 IPR044257 -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 271 304 - -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 46 74 - -
Ssu7g3096 885 Pfam Domain of unknown function (DUF4378) 721 881 IPR025486 -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 528 579 - -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 428 462 - -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 321 367 - -
Ssu7g3096 885 PANTHER TRM32-LIKE PROTEIN (DUF3741) 1 884 - -
Ssu7g3096 885 MobiDBLite consensus disorder prediction 662 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3096 Ssu-Chr7 72232953 72237504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3096 234 875 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 33.080 1.49e-84 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3096 - - gmx:100807303 1444.1