Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3092 ATGGCGGTTTCTTCTTCTGCAAAATGGGTCCTTTTCTTGCTTCTCGCGCTGCTCATTCGAGAAGAAGCCATGGCCACACCACAGATCCCTCACCTCAGGAATGTTGAAGTTGAAAGACACAGGTTGCCGAGCTTGAACAACTCATCAATGGCGGCGAGGGCAAAAGAGGCTGAGAAATTAAATGAGCGTGCTGCAGAAGCTAACCCAGAGGAGGTGGTTTCAATGGTTGAGAtGAGCATCCAGAACAGCACAGAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGCAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCAGAAATGCCATTGGTGGTCGTGATGGCAAGTTCTATGTGGTGACTGACCCCAGGGATGATGACCCTGTTAACCCCAAACCTGGCACTCTTCGCCATGCTGTGATCCAGGACAGGCCCCTGTGGATTGTGTTCCAGAGGGACATGGTAATTCAGTTGAAGCAAGAGCTAATCATGAACAGCTTCAAGACCATTGATGGGAGAGGAGTCAATGTGCACATTGCTAATGGGGCATGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTGCACGTCCATGACTGCAAACCCACTGGAAATGCCATGGTGAGGAGCTCCCCCACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATTTTTGGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCCATAACAATTTCCAACAACCACTTCACCCACCATAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCAAATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACggtaa 984 0.498 MAVSSSAKWVLFLLLALLIREEAMATPQIPHLRNVEVERHRLPSLNNSSMAARAKEAEKLNERAAEANPEEVVSMVEMSIQNSTERRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFQRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHVHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3092 327 Gene3D - 97 327 IPR012334 -
Ssu7g3092 327 SMART amb_all 172 327 IPR002022 -
Ssu7g3092 327 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Ssu7g3092 327 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Ssu7g3092 327 PRINTS Pollen allergen Amb family signature 324 327 IPR018082 -
Ssu7g3092 327 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Ssu7g3092 327 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Ssu7g3092 327 PANTHER PECTATE LYASE 13 327 - -
Ssu7g3092 327 Pfam Pectate lyase 179 326 IPR002022 -
Ssu7g3092 327 SUPERFAMILY Pectin lyase-like 73 327 IPR011050 -
Ssu7g3092 327 PANTHER PECTATE LYASE 18-RELATED 13 327 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3092 Ssu-Chr7 71827705 71831626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3092 32 327 Polysaccharide Lyase AT4G13710 77.524 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3092 K01728 - gmx:100808253 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3092 7 71827705 71831626 Ssu7g3092 7 71827705 71831626 ECH