Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3082 ATGGACATGGACATGGACATTCCCCTCCCCGAAGAACTCGAATTCCTGGAATCAAATTCTCACTTCCCCGAACAAGACCGACACCAAGAAGAAGACCATCACAATTACTTCCCCGACCTCGACCCCGCCACCGAGCCCCGCTCTCCACCACCGCCTTCAGATCTCGCGGTTCCGTCCGAGACCGAATCCAACGGTCGCAAGCGATCGCGTCCGAATTCTCCCGAAGAGGAGAAGAGAGCGAAGGTTAGGGTTGCCGTCGAGGAGGAttcctcctccgccgccgccgACGAGGACTGGCTCCGGTACTCTCCTCCGCCGGCGGAAACGGCGGAGGTAACGGCATTCGCGAAGGAGAAGACGCTGTCGAGGTTCGCCTCGGAGATCGACGGCGAGTGCATGCCGATCACCGCGCCCAACGGTGACAGGGTTTACGCGAAGCTGAACCGGTTCCAAGGAGAGGAGCGCGTCACGAAGCTCGATTGCAATGGATATTCTGCTGAGCTTAGTTCAGAACCAATTAATGTTATACTTGAGAGGTTGGAGCAAGAGGCTTTCGCTAAGGCCTTGGAAGCTAGTTCTGAAGGCCAAAGTGTTCTAGATGTTCCTGAAGCACAAACGGTTCATGAGCGACTTTGGGTTGATAAATATGCTCCAAAATCATTTACCGAGCTTCTCAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTGAAACAATGGGATTCTATTGTGTTTGGATCTGAAATTCGAAGCACATCAGATGACATTTTGTCTGCTTTGAAACGACATTCTTCTATTGTGCACAATCAGAAACCTTTGAATTCAAAGTTTCCAAGGATGAATGGAGGGCCCAGATGGAGTAATGGGAGGAGCTATATAAATTCTAGAAGTATGGATGAGAGTGGTAGTTCAAAGAGTATTCAAGAAGTATGGAATACGAAGTCAAGGAATATTAGTCCATCAGAACAAAAGATCCTTCTGCTCTGTGGACCACCAGGTCTTGGAAAAACAACACTTGCACATGTAGCTGCTAGGCACTGTGGATATCATGTGGTGGAGgttAATGCTAGTGATGATCGTTCTACATCAACAATTGAATCCAAAATTCTTGATGTGGTTCAGATGAACTCCGTCTTGTCTGATTCAAGGCCAAAGTGTCTGgTGGTGGATGAAATTGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCCGAAAGGACGCCTAATGTAGGGAAACAAAGTTTGGGCAAAGGACAACTGGAAAGGAAGtcatcaaaaaagggttcaaaaacACCTTCATTGTCAAGACCTGTGATTTGCATTTGTAATGACCTATATGCACCTGCCTTAAGACCATTACGTCAGGTAGCCAAGGTTCATATATTTGTTCAACCAATAGTTAATCGTGTGGTAAACAGGTTGACATATATATGTAACAAGGAGGGTATGAAAGCTAGTGCAATTGCTCTCACTGCTCTAGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAATTTCTCTCCAAGAAGAAAGAAGCCCTCAATGTGTTTGATATTGGTTCTCAAGTAGTTGGCCAGAAGGACATGTCAAAGAATGTTCTAGACATCTGGAAAGAGATTTTCCATAagagaagaacaaaaaagatGGAAAGAAAATCTCATAGAGGCAAGTCCTTTGAATTTGACTCCTTGTACTCCCTTGTGTCAAACCGTGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATGTTTTGCGGCTCAATTATCATGATCCAGTGATGCAGAAAACTGTCAAGTGCTTCAACAATCTTGGAGTTTATGATCAAATACATCAATATATAATGCATACACAACAGATGCCCCTTTATGTATATTTGCCCTTAGTAGCAATTACTGTACATCATATAGTATCTCAAGTTCAGAAACCAAACATTGAGTGGCCAAAGTCACATCAGAGATATCGTACAATGATGATGGAAAAGATGGACATTTTGAGTACCTGGCACCACAAAATCCCACCGCATATTTCCAGGCACTTATCAGCTAGTTCCTTTGTTCAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCACCAACCATAAGACCGgtGGCATTACAACTACTATCAGATAAGGAGAAGAATGATCTTGCGCAATTAGTTAGCACAATGGTATCATATACTATAACATATAAGACTATGAAAACGGATATGCTGCCTCAAACCCTAAAGTGTGAAATAGAAGATGGCTTGACACTGTCTCTTGTTCCTCCTATCAATGATTTTATAAACTTCAAGGATTATACTTCAAACCATTATGTGCTTTCTTTAGCTATGAAGCAGGTTTTGATACATGAGGTTGAAAAGCATAAGATTTTACAAGTTAATATTGACAAAATGGTGGCTTTAGCAAATGGAGGGCATGAAGTTATTGAGACTGGAACTAACAACATCCCATTAGCCAATCCCAATCATGCAACTGCAGCTGatatgaaaactaaagaaaatcaGGTTAATGTTTCAGCAAGGCAAACAAATGCAAATCCCACAACAGTTTCACCAAACTTGAATTCCGGTAAAAATGCAAGTGCAACAGACAGTGGGAAACTACTAAACATGGGAAATATGAAAAAACCATCCAGAAGTTCCTCAAGTTTCTTTGACAGgtttaaaaagaaaaatgttaaggGTTTACAAAGTAATGACAGATCTCTACAAGAAGAAGCTACCTTGGAGAAAGATCGATAccctttactttttaaatttaatgagGGCTTTACTAATGCAGTCAAAAGGCCGGTTCGTATTCGTGAATTTCTATCCTAA 2871 0.4065 MDMDMDIPLPEELEFLESNSHFPEQDRHQEEDHHNYFPDLDPATEPRSPPPPSDLAVPSETESNGRKRSRPNSPEEEKRAKVRVAVEEDSSSAAADEDWLRYSPPPAETAEVTAFAKEKTLSRFASEIDGECMPITAPNGDRVYAKLNRFQGEERVTKLDCNGYSAELSSEPINVILERLEQEAFAKALEASSEGQSVLDVPEAQTVHERLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSIVFGSEIRSTSDDILSALKRHSSIVHNQKPLNSKFPRMNGGPRWSNGRSYINSRSMDESGSSKSIQEVWNTKSRNISPSEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIESKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISAERTPNVGKQSLGKGQLERKSSKKGSKTPSLSRPVICICNDLYAPALRPLRQVAKVHIFVQPIVNRVVNRLTYICNKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKEALNVFDIGSQVVGQKDMSKNVLDIWKEIFHKRRTKKMERKSHRGKSFEFDSLYSLVSNRGDSDLILDGIHENVLRLNYHDPVMQKTVKCFNNLGVYDQIHQYIMHTQQMPLYVYLPLVAITVHHIVSQVQKPNIEWPKSHQRYRTMMMEKMDILSTWHHKIPPHISRHLSASSFVQDLISPLLHILSPPTIRPVALQLLSDKEKNDLAQLVSTMVSYTITYKTMKTDMLPQTLKCEIEDGLTLSLVPPINDFINFKDYTSNHYVLSLAMKQVLIHEVEKHKILQVNIDKMVALANGGHEVIETGTNNIPLANPNHATAADMKTKENQVNVSARQTNANPTTVSPNLNSGKNASATDSGKLLNMGNMKKPSRSSSSFFDRFKKKNVKGLQSNDRSLQEEATLEKDRYPLLFKFNEGFTNAVKRPVRIREFLS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3082 956 Pfam ATPase family associated with various cellular activities (AAA) 327 442 IPR003959 GO:0005524|GO:0016887
Ssu7g3082 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 522 IPR027417 -
Ssu7g3082 956 MobiDBLite consensus disorder prediction 418 442 - -
Ssu7g3082 956 CDD AAA 325 425 - -
Ssu7g3082 956 Gene3D - 474 544 - -
Ssu7g3082 956 MobiDBLite consensus disorder prediction 17 40 - -
Ssu7g3082 956 MobiDBLite consensus disorder prediction 856 898 - -
Ssu7g3082 956 MobiDBLite consensus disorder prediction 61 86 - -
Ssu7g3082 956 MobiDBLite consensus disorder prediction 1 95 - -
Ssu7g3082 956 MobiDBLite consensus disorder prediction 856 903 - -
Ssu7g3082 956 SMART AAA_5 323 476 IPR003593 -
Ssu7g3082 956 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 955 - -
Ssu7g3082 956 CDD HLD_clamp_RFC 477 532 - -
Ssu7g3082 956 Gene3D - 209 472 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3082 324 532 Core DNA Replication Machinery Family AT5G22010 29.018 4.10e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3082 K11269 - gmx:100785041 1631.69