Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3080 ATGGCTCTGGAACTTGTTGCTGGACCTTTAATGGGAGCTGTTTTCAACGTGTTGCTTGAAAGGATAGCTTCTCCTGAGGTTGTCAACTtcttcaagaagaaaaaccGTGACCAGTTGCTCAAGGAGTTGAAGATCATCTTGTTGTCGGTCAATGCTGTGCTCAATGATGCTGAGGAAAAGCAAATGAATAATGAAGCAGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCCGCTGAGGATTTGCTTGATGAGATCTTCACTGATGCAAAAATCAAGGCAAAAGAGGTAAACACACTCCACAACACTCCTgtgaatttttatgataaagggGTTGAAGAGAGAATTAAAGATGTTCATGAGAGATTAGAGTTTATTATAAGGCAGAAAGAAGTGCTTGATCTCAAGAGGGGTGAGGAAGTCAAAATGGCACACAAGACACCAACCTCATCTGTGATGGAAGCATGTGATGTGTATGGAAGGGATAGTGAAAAAGAAGCCTTAGTTAACTTGCTGTTGTCAGGTGATGAAAAAATAGGTGTCATTCCCATTGTTGGAATGGGTGGAATTGGAAAAACCACCTTAGCTCAACTGGTTTACAATGATCACAGAGTGCAGAAGGAGTTTGATCTCAAGGCCTGGATTTATGTCTCTGAAGAATTTGACATTTGTAAGATCACAAAAAACCTTTTGGAGGCTGTCACATCTTGTAGTTGTGATACTgaagatttaaattttctccaGAGGGATCTCAAGATGTATATAATGAAGAAgaagtttttgtttgtgttggaTGACGTGTGgaatgaaaattatgataattggGACAAATTCAGGAGTCCATTTAAGCATGCAGGGGCACATGGAAGTAAGATTATTGTAACTACTCGAAGTGGATATGTTGCATCCATCATGCAGACTGTTTCACCTTATAATCTCAGTGAGTTGTCCAATGAAGATTCCtggaatttattttcaaaacatgcATTTGATTATGGCAATTCAAGTTTGCATCAAAGTCTAGACAAAGTTGGGAGAGAAATAGTCAGAAAGTGCAAAGGATTGCCTTTGGCTGTGAAGACTCTAGCAGGACTTTTGAGGTCTAAGAGTGAAAGTCATGAATGGTATAAAGTATTGAACAGTGAGATATGGGATCTGCAAGATCGTGAGAGTAACATTCTTCCAGCTTTGAGATTGAGCTATCATTATCTCCCTTCCCACTTGAAGAGATGTTTTGCTTATTGTGCAATTTTCCCAAAAGACTACGAATTTGAAAAGGAGAACCTAATTTTGTTGTGGATGGCAGAGGGTTTTCTCCAACAATCAAAGAGACATAGAAGAATTGAAGAAGTTGGAAATGAGTATTTTTGTGAACTAGTATCTAGATCATTTTTCCAGCAATCAAGGCGCGGCAAGTCATGTTGTCTAATGCATCACCTTGTAAATGACTTGGCTCAATTTGTGTCTGGACCATTTTCTGTCAGAATGGAAGGTAACAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCCCACATTATTGCAGATAGTTCCTCATATGAAAACCTGAAAGATGTTAGCAAAGCAAATTGCCTACGCACTTTTCTGCAAATAAGACCAGTAGGTACATCCATTGACTTGTTCAACAACATGCCAAATGATCTGTTAACAAAGTTAAGGTGCTTAAGGGTGTTATCTTTGGTAGGTACACATATCTATAGTTTACCTGATTCAATAGGTGAACTAAAACATCTGCGCTATCTAGAAGTGGCTGACACTGAGATTGTGAGGTTACCTGAATCCATCTGCAACTTGTACAATTTACAAACTCTGAAGTTAGTTGGATGTCACAATCTTATTGAACTGCCAACAGGTATGCATAAGCTTGTTAACTTGCGATACTTGGATATTAGAGGAACTTGTTTAAGGTGGATGCCATTGCAAATGAATGAATTAATAAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGAGTATGGATCTTCCATTGGTGAACTGGGCGAGCTATCGAGTTTGCATGGAGAATTGTTCGTTCATTACATTGAACATGTTGTTAATTATAAGGATTGTGAAAAGGCAAAGTTGAAGGACAAGCATGGTCTTGAAAAGTTGTCTTTGGATTGGTGCGGGGATGGGGATACTGATAACTCtcagcaagaaaaaaaaatactgaacaGCCTGCAACCTCATACAAATTTGAAGGAGCTTGATATCTATGACTATCCAGGCACAGAATTTCCAGAGTGGCTGGGGGATATCTCCTTTTATAACTTGGTGTTCTTACAGCTTAAAGGCTGTAAATATTGCTACAAACTGCCTCCACTTGGACAACTTCCAATGTTGAAAGAGCTTCAGATTagtaaatttgagggactagtgAGTGTGGGATCTGAGTTTCTTGGAAATGGTACCTCTTCTGTAACTGATTGCTTTCCTGCACTAGAAATTCTAAAGATTGAGTATATGTCAGCATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGCAGCAGAGCTTTCTGTCATCTTAGAGAGTTTCATATTGAAAACTGTCCCAAACTGACAGGGGATTTACCAGGCAACCTTCCATCTTTGACACTACTTGTAATCAGATATTGTAAACGTTTGCTTTGTTCGCTTCCTAAAGCTCCAGCTCTGCGCGTATTGAACATTCAGAATTGTGAGAGTTTAGAATTCCCAGTACACGCACTTTGGTGCCACCAATCACTGACATCATTGTTCTTGCATGGTAGCTGTGACTCACTCATGTCCTTGCCTTTAGATCTCTTCCCCAACCTCAAGTCTCTAGATATTTGGGGATGTAAAAATCTTGAAGCACTTACTGTTTCAGCATCAGATGCAACCCCTCCAAATTTAGAGTCCCTCCATTCCTTGTGCATAAGGCACTGtccaaatttcacatcatttccCAGGGGCGGATTTGCAGCACCAAAGCTCACTTTATTAACCATCAACTACTGTGAGAGGTTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGCTTGAAAGAAGTTCAACTGCGCGGATGTCCCAAAATTGAGTCATCAACTATGAGGCCACTCAGGATCCGGATTTGCAGCAAACTCATGGAAGGGAAACAAAACCTCTCTGATCCTCTCTTTGCAAGGTTGGAGGGTTTGGCCATTGTTCAAAGCCCCTCATCAAGTTAG 3231 0.3825 MALELVAGPLMGAVFNVLLERIASPEVVNFFKKKNRDQLLKELKIILLSVNAVLNDAEEKQMNNEAVKEWLEELKDVAFAAEDLLDEIFTDAKIKAKEVNTLHNTPVNFYDKGVEERIKDVHERLEFIIRQKEVLDLKRGEEVKMAHKTPTSSVMEACDVYGRDSEKEALVNLLLSGDEKIGVIPIVGMGGIGKTTLAQLVYNDHRVQKEFDLKAWIYVSEEFDICKITKNLLEAVTSCSCDTEDLNFLQRDLKMYIMKKKFLFVLDDVWNENYDNWDKFRSPFKHAGAHGSKIIVTTRSGYVASIMQTVSPYNLSELSNEDSWNLFSKHAFDYGNSSLHQSLDKVGREIVRKCKGLPLAVKTLAGLLRSKSESHEWYKVLNSEIWDLQDRESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFEKENLILLWMAEGFLQQSKRHRRIEEVGNEYFCELVSRSFFQQSRRGKSCCLMHHLVNDLAQFVSGPFSVRMEGNNSNEIKERTRHLSHIIADSSSYENLKDVSKANCLRTFLQIRPVGTSIDLFNNMPNDLLTKLRCLRVLSLVGTHIYSLPDSIGELKHLRYLEVADTEIVRLPESICNLYNLQTLKLVGCHNLIELPTGMHKLVNLRYLDIRGTCLRWMPLQMNELISLQNLSDFFVGKEYGSSIGELGELSSLHGELFVHYIEHVVNYKDCEKAKLKDKHGLEKLSLDWCGDGDTDNSQQEKKILNSLQPHTNLKELDIYDYPGTEFPEWLGDISFYNLVFLQLKGCKYCYKLPPLGQLPMLKELQISKFEGLVSVGSEFLGNGTSSVTDCFPALEILKIEYMSAWEKWYPNAENAGSRAFCHLREFHIENCPKLTGDLPGNLPSLTLLVIRYCKRLLCSLPKAPALRVLNIQNCESLEFPVHALWCHQSLTSLFLHGSCDSLMSLPLDLFPNLKSLDIWGCKNLEALTVSASDATPPNLESLHSLCIRHCPNFTSFPRGGFAAPKLTLLTINYCERLNSLPEQMHDLMPSLKEVQLRGCPKIESSTMRPLRIRICSKLMEGKQNLSDPLFARLEGLAIVQSPSSS 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3080 1076 Gene3D - 15 129 - -
Ssu7g3080 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 417 IPR027417 -
Ssu7g3080 1076 Pfam NB-ARC domain 164 383 IPR002182 GO:0043531
Ssu7g3080 1076 SUPERFAMILY RNI-like 821 1036 - -
Ssu7g3080 1076 Coils Coil 40 60 - -
Ssu7g3080 1076 Gene3D Ribonuclease Inhibitor 867 964 IPR032675 -
Ssu7g3080 1076 Gene3D Ribonuclease Inhibitor 965 1051 IPR032675 -
Ssu7g3080 1076 PRINTS Disease resistance protein signature 256 270 - -
Ssu7g3080 1076 PRINTS Disease resistance protein signature 183 198 - -
Ssu7g3080 1076 PRINTS Disease resistance protein signature 354 368 - -
Ssu7g3080 1076 PRINTS Disease resistance protein signature 939 955 - -
Ssu7g3080 1076 PANTHER DISEASE RESISTANCE PROTEIN RP 22 869 IPR044974 GO:0006952
Ssu7g3080 1076 SUPERFAMILY L domain-like 479 886 - -
Ssu7g3080 1076 Gene3D - 317 401 IPR042197 -
Ssu7g3080 1076 PANTHER OS05G0414200 PROTEIN 22 869 - -
Ssu7g3080 1076 Pfam Rx N-terminal domain 11 93 IPR041118 -
Ssu7g3080 1076 Gene3D - 141 311 IPR027417 -
Ssu7g3080 1076 Gene3D Ribonuclease Inhibitor 521 839 IPR032675 -
Ssu7g3080 1076 Gene3D - 402 489 IPR036388 -
Ssu7g3080 1076 CDD RX-CC_like 49 130 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3080 Ssu-Chr7 71448390 71451620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3080 155 798 WRKY Transcription Factor Family AT5G45050 23.348 6.38e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3080 - - ccaj:109812375 1924.44