Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3078 ATGGCTCTGGAACTTGCTGCTGGACCTTTAATGGGAGCTGTATTCAACGTTTTGCTTGAAAGGATAGCTTCTCCTGAGGTTGTCAACTtcttcaagaagaaaaaccGTGACAAGTTGCTCAAGGAGTTGAAGATCATCTTGTTGTCGGTCAATGCTGTGCTCAATGATGCTGAGGAAAAGCAAATGAATAATGAAGCAGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCCGCTGAGGATTTGCTTGATGAGATCTTCACTGATGCAAAAGTCAAGGCAAAAGAGGTAAACACACTCCACAACACTCCTgtgaatttttatgataaagggGTTGAAGAGAGAATTAAAGATGTTCATGAGAGATTAGAGTTTATTATAAGGCAGAAAGAAGTGCTTGATCTCAAGAGGGGTGAGGAAGTCAAAATGGCACACAAGACACCAACCTCATCTGTGATGGAAGCATGTGATGTGTATGGAAGGGATAGTGAAAAAGAAGCCTTAGTTAACTTGCTGTTGTCAGGTGATGAAAAAATAGGTGTCATTCCCATTGTTGGAATGGGTGGAATTGGAAAAACCACCTTAGCTCAACTGGTGTACAATGATCACAGAGTGCAGAAGGAGTTTGATCTCAAGGCCTGGATTTATGTCTCTGAAGAATTTGACATTTGTAAGATCACAAAAAACCTTTTGGAGGCTGTCACATCTTGTAGTTGTGATACTgaagatttaaattttctccaGAGGGATCTCAAGATGTATATAATGAAGAAgaagtttttgtttgtgttggaTGACGTGTGgaatgaaaattatgataattggGACAAATTCAGGAGTCCATTTAAGCATGCAGGGGCACATGGAAGTAAGATTATTGTAACTACTCGAAGTGGATATGTTGCATCCATCATGCAGACTGTTTCACCTTATAATCTCAGTGAGTTGTCCAATGCAGATTCCtggaatttattttcaaaacatgcATTTGATTATGGCAATTCAAGTTTGCATCAAAGTCTAGACAAAGTTGGGAGAGAAATAGTCAGAAAGTGCAAAGGATTGCCTTTGGCTGTGAAGACTCTAGCAGGACTTTTGAGGTCTAAGAGTGAAAGTCATGAATGGTATAAAGTATTGAACAGTGAGATATGGGATCTGCAAGATCGTGAGAGTAACATTCTTCCAGCTTTGAGATTGAGCTATCATTATCTCCCTTCCCACTTGAAGAGATGTTTTGCTTATTGTGCAATTTTCCCAAAAGACTATGAATTTGAAAAGGAGAACCTAATTTTGTTGTGGATGGCAGAGGGTTTTCTCCAACAATCAAAGAGACATAGAAGAATTGAAGAAGTTGGAAATGAGTATTTTTGTGAACTAGTATCTAGATCATTTTTCCAGCAATCAAGGCGCGGCAAGTCATGTTGTCTAATGCATCACCTTGTAAATGACTTGGCTCAATTTGTATCTGGACCATTTTCTGTCAGAATGGAAGGTAACAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCCCACATTATTGCAGATAGTTCCTCATATGAAAACCTGAAAGATGTTAGCAAAGCAAATTGCCTACGCACTTTTCTGCAAATAAGACCAGTAGGTACATCCATTGACTTGTTCAACAACATGCCAAATGATCTGTTAACAAAGTTAAGGTGCTTAAGGGTGTTATCTTTGGTAGGTACACATGTCTATAGTTTACCTGATTCAATAGGTGAACTAAAACATCTGCGCTATCTAGAAGTGGCTGACACTGAGATTGTGAGGTTACCTGAATCCATCTGCAACTTGTACAATTTACAAACTCTGAAGTTAGTTGGATGTCACAATCTTATTGAACTGCCAACAGGTATGCATAAGCTTGTTAACTTGCGATACTTGGATATTAGAGGAACTTGTTTAAGGTGGATGCCATTGCAAATGAATGAATTAATAAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGAATATGGATCTTCCATTGGTGAACTGGGCGAGCTATCAAGTTTGCATGGAGAATTGTTCATTCATTACATTGAACATGTTGTTAATTATAAGGATTGTGAAAAGGCAAAGTTAAAGGACAAGCATGGTCTTGAAAAGTTGTCTTTGGATTGGTGCGGGAATGGGGATACTGATAACTCtcagcaagaaaaaaaaatactgaacaGCCTGCAACCTCATACAAATTTGAAGGAGCTTGATATCTATGACTATCCAGGCACAGAATTTCCAGAGTGGCTGGGGGATATCTCCTTTTATAACTTGGTGTTCTTACAGCTTAAAGGCTGTAAATATTGCTACAAATTGCCTCCACTTGGACAACTTCCAATGTTGAAAGAGCTTCAGATTagtaaatttgagggactagtgAGTATGGGATCTGAGTTTCTTGGAAATGGAACCTCTTCTGTAACTGATTGCTTTCCTGCACTAGAAATTCTAAAGATTGAGTATATGTCAGCATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGCAGCAGAGCTTTCTGTCATCTTAGAGAGTTTCGTATTGAAAACTGTCCCAAACTGACGGGGGATTTACCAGGCAACCTTCCATCTTTGACACTACTTGTAATCAGATATTGTAAACGTTTGCTTTGTCCGCTTCCTAAAGCTCCAGCTCTGCGCGTATTGAACATTCAGAATTGTGATAGTTTAGAATTCCCAGTACACGCACTTTGGTGCCACCAATCACTGACATCATTGTTCTTGCATGGTAGCTGTGACTCACTCAAGTCCTTGCCTTTAGATCTCTTCCCCAACCTCAAGTCTCTAGATATTTGGGGATGCAAAAATCTTGAAGCACTTACTGTTTCAGCATCAGATGCAACCCCTCCAAATTTCAAATCCCTCCATTCCTTGTGCATAAGGCTTTGtccaaatttcacatcatttccCAAGGGCGGATTTGCAGCCCCAAATCTCACTTTATTAACCATCAACTACTGTGAGAAATTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGCTTGAAAGAAGTTCAACTGCGGGGTTGTCCCAAAATTGAGTCATCAACTATAAGGCCACTCAGGATCCGGATTTGCAGCAAACTCATGGAAAGGAAACAGAACCACTCTGATCCTCTCTTTGCAAGGTTGAAAGATTTGGCCACTGTTCAAAGCCCCACATCAAGTACACCACCCTAG 3240 0.3799 MALELAAGPLMGAVFNVLLERIASPEVVNFFKKKNRDKLLKELKIILLSVNAVLNDAEEKQMNNEAVKEWLEELKDVAFAAEDLLDEIFTDAKVKAKEVNTLHNTPVNFYDKGVEERIKDVHERLEFIIRQKEVLDLKRGEEVKMAHKTPTSSVMEACDVYGRDSEKEALVNLLLSGDEKIGVIPIVGMGGIGKTTLAQLVYNDHRVQKEFDLKAWIYVSEEFDICKITKNLLEAVTSCSCDTEDLNFLQRDLKMYIMKKKFLFVLDDVWNENYDNWDKFRSPFKHAGAHGSKIIVTTRSGYVASIMQTVSPYNLSELSNADSWNLFSKHAFDYGNSSLHQSLDKVGREIVRKCKGLPLAVKTLAGLLRSKSESHEWYKVLNSEIWDLQDRESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFEKENLILLWMAEGFLQQSKRHRRIEEVGNEYFCELVSRSFFQQSRRGKSCCLMHHLVNDLAQFVSGPFSVRMEGNNSNEIKERTRHLSHIIADSSSYENLKDVSKANCLRTFLQIRPVGTSIDLFNNMPNDLLTKLRCLRVLSLVGTHVYSLPDSIGELKHLRYLEVADTEIVRLPESICNLYNLQTLKLVGCHNLIELPTGMHKLVNLRYLDIRGTCLRWMPLQMNELISLQNLSDFFVGKEYGSSIGELGELSSLHGELFIHYIEHVVNYKDCEKAKLKDKHGLEKLSLDWCGNGDTDNSQQEKKILNSLQPHTNLKELDIYDYPGTEFPEWLGDISFYNLVFLQLKGCKYCYKLPPLGQLPMLKELQISKFEGLVSMGSEFLGNGTSSVTDCFPALEILKIEYMSAWEKWYPNAENAGSRAFCHLREFRIENCPKLTGDLPGNLPSLTLLVIRYCKRLLCPLPKAPALRVLNIQNCDSLEFPVHALWCHQSLTSLFLHGSCDSLKSLPLDLFPNLKSLDIWGCKNLEALTVSASDATPPNFKSLHSLCIRLCPNFTSFPKGGFAAPNLTLLTINYCEKLNSLPEQMHDLMPSLKEVQLRGCPKIESSTIRPLRIRICSKLMERKQNHSDPLFARLKDLATVQSPTSSTPP 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3078 1079 PRINTS Disease resistance protein signature 183 198 - -
Ssu7g3078 1079 PRINTS Disease resistance protein signature 939 955 - -
Ssu7g3078 1079 PRINTS Disease resistance protein signature 256 270 - -
Ssu7g3078 1079 PRINTS Disease resistance protein signature 354 368 - -
Ssu7g3078 1079 Pfam Rx N-terminal domain 11 93 IPR041118 -
Ssu7g3078 1079 Gene3D - 317 401 IPR042197 -
Ssu7g3078 1079 PANTHER OS05G0414200 PROTEIN 22 869 - -
Ssu7g3078 1079 Gene3D - 402 489 IPR036388 -
Ssu7g3078 1079 Coils Coil 40 60 - -
Ssu7g3078 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 417 IPR027417 -
Ssu7g3078 1079 Gene3D Ribonuclease Inhibitor 886 1055 IPR032675 -
Ssu7g3078 1079 PANTHER DISEASE RESISTANCE PROTEIN RP 22 869 IPR044974 GO:0006952
Ssu7g3078 1079 Pfam NB-ARC domain 164 383 IPR002182 GO:0043531
Ssu7g3078 1079 Gene3D Ribonuclease Inhibitor 520 885 IPR032675 -
Ssu7g3078 1079 SUPERFAMILY RNI-like 820 1036 - -
Ssu7g3078 1079 Gene3D - 141 311 IPR027417 -
Ssu7g3078 1079 CDD RX-CC_like 49 130 IPR038005 -
Ssu7g3078 1079 SUPERFAMILY L domain-like 479 886 - -
Ssu7g3078 1079 Gene3D - 13 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3078 Ssu-Chr7 71397950 71401189 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3078 565 661 WRKY Transcription Factor Family AT4G12020 31.633 3.18e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3078 - - ccaj:109812375 1904.8