Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3071 ATGTCTTCTCAGCATCTTCTGCTTCTCCCTGAGGAACTCCTCGTGGAAATTCTGTCGTGGGTTTCGGTGAAGGCTCTCATGCGATTCAGGTGCGTCTCCAAGTGGTGGAACTCCCTCGTCCTTGACCCTACATTCGTTAAACTGCATCTTCAAAGGTCCTCAAAAGACACTCACGTTTTGTTAACGTTCGAAGACGACAACGATGAAAGCAAGTATTGCGCACCCTGCTCCGTACATGGTTTACTCGAGAATCCATCATCCACCATAGATGGTTGTCACCAATTCAACCACGACTACAGTGTCTTGGGTGTCTGCAATGGGTTGGTTTGCTTACGCGATTCTTACCTTGGAgatgaatttgaaaaatactGGGTTCGATTTTGGAACCCTGCCACAAGAGTCATATCTGAAGATTCGCCACGCATACGTCTCAGTTCGCGCGATTATGAAATTGGATGGGCGTTGACTGTGCTGCACAACTCATCATCTAAAGTAATGTTCATAGCCTCTTGCTATGCCCACTGCCCAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCACCATTGCTGGCCAAGACATGTAATGGTAAGCAGATGACTTACCTCTTGGCAAGTAATCTAGGTGTACTTCTTGAAATATCATCTGGGACTAGGAATATTGTTGCAGTTGCAGATAATCTTGCTTTAAAATAG 696 0.4483 MSSQHLLLLPEELLVEILSWVSVKALMRFRCVSKWWNSLVLDPTFVKLHLQRSSKDTHVLLTFEDDNDESKYCAPCSVHGLLENPSSTIDGCHQFNHDYSVLGVCNGLVCLRDSYLGDEFEKYWVRFWNPATRVISEDSPRIRLSSRDYEIGWALTVLHNSSSKVMFIASCYAHCPTEMQETWLRSDSPLLAKTCNGKQMTYLLASNLGVLLEISSGTRNIVAVADNLALK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3071 231 ProSiteProfiles F-box domain profile. 3 48 IPR001810 GO:0005515
Ssu7g3071 231 SMART fbox_2 9 49 IPR001810 GO:0005515
Ssu7g3071 231 Pfam F-box-like 8 43 IPR001810 GO:0005515
Ssu7g3071 231 Gene3D - 1 86 - -
Ssu7g3071 231 PANTHER OS02G0783600 PROTEIN 7 164 - -
Ssu7g3071 231 Pfam Pectinacetylesterase 154 197 IPR004963 GO:0016787
Ssu7g3071 231 PANTHER CYCLIN-LIKE F-BOX, F-BOX PROTEIN INTERACTION DOMAIN 7 164 - -
Ssu7g3071 231 SUPERFAMILY F-box domain 4 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3071 Ssu-Chr7 71000681 71007215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3071 154 198 Carbohydrate Esterase AT4G19420 51.111 1.70e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3071 - - vun:114184511 223.402