Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3056 ATGTTCCTGCTTTTGTTGCTCTCCAACTTGCTAATCCAAACTCAAACTGGTGCAACCTCTGTGGTTGATGACCCCAACACTTTCTCCTTTGTTACTTTCACTCCTGAAAGTTGCACCAATGGTGAGTTGCTTTGTATGGGTTCAGCCACTGCTGGCAATGGGTATTTAAGTCTCACCCCAGAGCCACAACAAAGCAGCAATTCAAgttcaccatcatcatcatctaacACAACCAACAATGTTGGAAGGGTTTTGTACCCTCATCCTGTGCATGTTTGGCCAGCAATTATCTCCACCACATTCACTCTTAGGATCActcctttttcaaaaaattcaaccaGCTCTGGTGATGGAATGGCACTAGTGTTTGCACAAGATAATAGGCCCTCACCAAATGCCAGCTATGGCTCATATCTTGGCATGTTTGATCGGTCTACACAAGGTGGGGCTTTTCGACAAATAGCCGTGGAGATGGACACTTTCATGAATGAATTTGATCCAGATGGAAACCACATTGGGATAGTcacaacaagcatcacaaatCCACTTGCATCTGAGAGTCTCAATAGCACTGGCATTGACCTCAAAAGTGGAAGAGACATTGAGGTCAAAATTGACTATGATGGATGgagtaaaatgatttttgtctCTGTGGGATACTCTGAAGGCCAATTGAAGAGTGTCCTTAACCATTCAATTAACCTACCTGACAGAATTCCAAGCTCCATTTATGTAGGTTTCACAGCCTCCACAGGCAACACTTTTCCTGAAAGCCACCAGGTCCTCAATTGGGTATTCACATCAGTGCCACTGCCTATTCTTTCTGTTGAACACACTAAAGTTGGCACCATCAAGACCATGTTGATAATTATCATGCCAGCCTTTTTGTTAGTATgcttatttccttttatttggaTAGCTTGGAGGAAAAGATATGTGAGGGGTAACAAGAAGGAGGATATAGAAAGCCTATCAAAGAAGGCTGCAGATATCCCCAAGGTGTTCACTTACAAGCAACTATCAAAGGCCACATGCAACTTCAGCAAGGAAAATCTTTTGGGAAGAGGTGCATTTGGTAGTGTTTATAAAGGCATCATATTAGACTCTGGAAAAACTGTAGCAGTAAAGAAGATTTCAGCAACTTCTAAGCAAGGTGAAAAAGAGTTCTTAGCTGAAATATGTACCATAGGGCGTCTTAAGCACAAAAACTTAGTGAAGCTCCAAGGCTGGTGCAATGAAGACAAGAATCTTCTCCTGGTTTATGACTACATGCAAAATGGAAGCCTTGATCACTTCATAGGCAAGGACATTCTGAACTGGCAAACCAGGCACAAGATATTGACAGGATTGGCATCAGCATTACTTTACCTTCATGAAGAGTGTGGAAACCCTGTTGTCCACAGAGATGTTAAGCCTAACAATGTCATGCTGGACTCTAATCACAATGCTCATTTAGGAGATTTTGGGCTAGCAAGATTACTCAAAAAAGAAGGTTCAGTGACAACAAATGTAGCTGGAACTCTAGGATATTTGGCCCCTGAAGTAAGCTTTACAGGCAAAGCCACACCTGAATCAGATGTGTATAGCTTGGGCATTGTAGTACTTGAAGTCATATGTGGGAAATGGTTAAACTGGATTAAGCAAGGGAACAGTTTCGTAGACTGTGTGTGGAATTTGCATGCTCAAAATGCATTGCTAGAGTGTGTTGACAAACGGCTAGAAAACAATTTTGATGAGGAAGAAGCTAAAAGGGCATTGATGGTTGGATTGGCATGTTTGCATCCGGATTCCATGTTCAGGCCAAGGATGAGAAAAGTGGTGAACATTCTTCAGAACCCAAATGAACCTTTAATGGAATTACCAGGGGTGAGACCCACTGGAGTTTATGTATCAGTTTCTTCTGCTACATCAACCTCTAACTTTGGCTCTAGAGGTGAGTCACAGCTTCAATCATCTACAAAATCATTGGATGAAAATTCAATTGTGTGTGAAGTATGA 1998 0.4004 MFLLLLLSNLLIQTQTGATSVVDDPNTFSFVTFTPESCTNGELLCMGSATAGNGYLSLTPEPQQSSNSSSPSSSSNTTNNVGRVLYPHPVHVWPAIISTTFTLRITPFSKNSTSSGDGMALVFAQDNRPSPNASYGSYLGMFDRSTQGGAFRQIAVEMDTFMNEFDPDGNHIGIVTTSITNPLASESLNSTGIDLKSGRDIEVKIDYDGWSKMIFVSVGYSEGQLKSVLNHSINLPDRIPSSIYVGFTASTGNTFPESHQVLNWVFTSVPLPILSVEHTKVGTIKTMLIIIMPAFLLVCLFPFIWIAWRKRYVRGNKKEDIESLSKKAADIPKVFTYKQLSKATCNFSKENLLGRGAFGSVYKGIILDSGKTVAVKKISATSKQGEKEFLAEICTIGRLKHKNLVKLQGWCNEDKNLLLVYDYMQNGSLDHFIGKDILNWQTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMLDSNHNAHLGDFGLARLLKKEGSVTTNVAGTLGYLAPEVSFTGKATPESDVYSLGIVVLEVICGKWLNWIKQGNSFVDCVWNLHAQNALLECVDKRLENNFDEEEAKRALMVGLACLHPDSMFRPRMRKVVNILQNPNEPLMELPGVRPTGVYVSVSSATSTSNFGSRGESQLQSSTKSLDENSIVCEV 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3056 665 SUPERFAMILY Protein kinase-like (PK-like) 331 634 IPR011009 -
Ssu7g3056 665 CDD lectin_legume_LecRK_Arcelin_ConA 28 268 IPR001220 GO:0030246
Ssu7g3056 665 MobiDBLite consensus disorder prediction 636 659 - -
Ssu7g3056 665 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 269 IPR013320 -
Ssu7g3056 665 Gene3D Phosphorylase Kinase; domain 1 307 423 - -
Ssu7g3056 665 ProSitePatterns Protein kinases ATP-binding region signature. 353 377 IPR017441 GO:0005524
Ssu7g3056 665 Gene3D Transferase(Phosphotransferase) domain 1 424 618 - -
Ssu7g3056 665 Pfam Protein kinase domain 348 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3056 665 PANTHER - 77 270 - -
Ssu7g3056 665 PANTHER - 287 655 - -
Ssu7g3056 665 Gene3D - 24 277 - -
Ssu7g3056 665 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 77 270 - -
Ssu7g3056 665 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 287 655 - -
Ssu7g3056 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Ssu7g3056 665 MobiDBLite consensus disorder prediction 636 660 - -
Ssu7g3056 665 CDD STKc_IRAK 353 612 - -
Ssu7g3056 665 SMART serkin_6 347 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3056 665 ProSiteProfiles Protein kinase domain profile. 347 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3056 665 Pfam Legume lectin domain 27 269 IPR001220 GO:0030246
Ssu7g3056 665 MobiDBLite consensus disorder prediction 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3056 Ssu-Chr7 70413637 70416808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3056 31 626 Receptor kinase-like Gene Family AT5G55830 38.949 8.54e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu7g3056 Pkinase 1.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3056 - - ccaj:109810929 1081.24