Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3052 ATGGAGCTTGATTCTGCCTTAACTATTCAAGTTCTTCGTCAAGAAAACTCTGTTGCGAACAATTATCCGGTGCTGCTGTACTCCGAAGCCAAGAAGCATAAGCCTGATTCAGAAACAATAACATCTTGTTGCTCAATATGTTTGGCAGATTACAAGGACACAGACTGGATGAAGCTTCTACCTGATTGTGGTCACTTGTTTCATAGAGATTGCATTGATAGGTGGTTGCAGGTAAACCTCTCGTGCCCCATGTGTCGAAATTCGCCACTGCCAACACCTCTTTCAACTCCTCTTGCTGAAGTTACTCCCTTGGCAACAAGACGCGATTAA 330 0.4394 MELDSALTIQVLRQENSVANNYPVLLYSEAKKHKPDSETITSCCSICLADYKDTDWMKLLPDCGHLFHRDCIDRWLQVNLSCPMCRNSPLPTPLSTPLAEVTPLATRRD 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3052 109 SUPERFAMILY RING/U-box 22 91 - -
Ssu7g3052 109 ProSiteProfiles Zinc finger RING-type profile. 44 86 IPR001841 -
Ssu7g3052 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 90 IPR013083 -
Ssu7g3052 109 SMART ring_2 44 85 IPR001841 -
Ssu7g3052 109 Pfam Ring finger domain 44 86 IPR001841 -
Ssu7g3052 109 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 14 103 - -
Ssu7g3052 109 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 103 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3052 Ssu-Chr7 70267941 70268270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3052 20 106 C3H Transcription Factor Family AT2G35910 60.920 4.26e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3052 - - gmx:102670414 182.57