Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3051 ATGAACAGCACTTCCAATTCTGATGACAACCCTTCAGAGGAGCAGAACggatatttattttactcagTTGGGTTATCTCTAGGGGTTCTCCTAGTGATCACTGTCGTGAGTCTCGTTTCCTTTTACTGTAACCGCAGAAGCTTGCCAAACAGGCAAGTAAGTGCCACTGCTAACACCAACATGGAGCTTGATTCTGCCTTAACTATTCAAGTTCTTCGTCAAGAAAACTCTGTTGCGAACAATTATCCGGTGCTGCTGTACTCCGAAGCCAAGAAGCATAAGCCTGATTCAGAAACAATAACATCTTGTTGCTCAATATGTTTGGCAGATTACAAGGACACAGACTGGATGAAGCTTCTACCTGATTGTGGTCACTTGTTTCATAGAGATTGCATTGATAGGTGGTTGCAGGTAAACCTCTCGTGCCCCATGTGTCGAAATTCGCCACTGCCAACACCTCTTTCAACTCCTCTTGCTGAAGTTACTCCCTTGGCAACAAGACGCGATTAA 510 0.4333 MNSTSNSDDNPSEEQNGYLFYSVGLSLGVLLVITVVSLVSFYCNRRSLPNRQVSATANTNMELDSALTIQVLRQENSVANNYPVLLYSEAKKHKPDSETITSCCSICLADYKDTDWMKLLPDCGHLFHRDCIDRWLQVNLSCPMCRNSPLPTPLSTPLAEVTPLATRRD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3051 169 SMART ring_2 104 145 IPR001841 -
Ssu7g3051 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 150 IPR013083 -
Ssu7g3051 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 163 IPR045899 -
Ssu7g3051 169 SUPERFAMILY RING/U-box 82 150 - -
Ssu7g3051 169 Pfam Ring finger domain 104 146 IPR001841 -
Ssu7g3051 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Ssu7g3051 169 CDD RING-H2_PA-TM-RING 103 146 - -
Ssu7g3051 169 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3051 Ssu-Chr7 70214374 70214883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3051 14 167 C3H Transcription Factor Family AT5G06490 38.068 2.52e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3051 - - gmx:102670414 244.973