Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3035 ATGTTTCATCACTTCTTAAAGATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACATCTCTTAGGGGAAAACATCTCGGACTCCTTCCTCACCAATCTCCATCCTGTAAAACTTGAACCCCCCTCATCACCAGAATTTGATTTCGGCTCATATATTTCAGACAGCAGCTTCTTCACTTTCCTCGAAGGCTATGATTTGGTAGCAGACATGGAGTTTGTTGATCACAGTTTCTCTCCAAAGGCACTGAAGTCCACAGGAACCATCACCCACCCCTCAGAGGAAGCTAAGAAATGCAATTCTCCTAAACCGGAAGAGAAAGCAAAGAAATCAGAATATGATGAGGCAAGGCGTTATAGGGGAGTTAGGAGAAGGCCTTGGGGCAAGTTTGCTGCTGAAATCCGTGATCCAACAAGGAAAGGGACAAGGGTTTGGCTTGGCACTTTTGACAGTGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCCATTTTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCAAAGCCAAACTATTGTGGCAGGAAAAGGAGCAGAGAGAGCCATGAATTGAAGCTGCCACAGGTTCAAGTTCAACATGGTGTGTCCTGA 648 0.4537 MFHHFLKMTTAEETSNLDLIRQHLLGENISDSFLTNLHPVKLEPPSSPEFDFGSYISDSSFFTFLEGYDLVADMEFVDHSFSPKALKSTGTITHPSEEAKKCNSPKPEEKAKKSEYDEARRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNYCGRKRSRESHELKLPQVQVQHGVS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3035 215 CDD AP2 129 179 IPR001471 GO:0003700|GO:0006355
Ssu7g3035 215 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
Ssu7g3035 215 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Ssu7g3035 215 MobiDBLite consensus disorder prediction 188 205 - -
Ssu7g3035 215 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Ssu7g3035 215 MobiDBLite consensus disorder prediction 87 116 - -
Ssu7g3035 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 200 - -
Ssu7g3035 215 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Ssu7g3035 215 PRINTS Ethylene responsive element binding protein signature 161 181 IPR001471 GO:0003700|GO:0006355
Ssu7g3035 215 MobiDBLite consensus disorder prediction 99 116 - -
Ssu7g3035 215 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Ssu7g3035 215 MobiDBLite consensus disorder prediction 180 215 - -
Ssu7g3035 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 12 200 - -
Ssu7g3035 215 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3035 Ssu-Chr7 69473807 69474454 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3035 8 209 AP2-EREBP Transcription Factor Family AT5G07580 39.908 5.03e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g3035 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3035 - - ccaj:109813158 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3035 7 69473807 69474454 Ssu7g3035 7 69473807 69474454 ECH