Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3033 ATGCAAAGCTTTGAACCCAACTTCACTCTTTGCACCTCAAACACCGTGGAAGCTTCAATTTCACAACCAGTGCAAAGTTCAATTTCACAATCTGATATCAGTATCACTGATTACCTCTTACCTCAAGAAGTTCAATTTCAAGATCAAGTTCAAGTTCCCATGAGCAATAATAACATACCAATGAACCATACCCACCTTCAAATGCCTCAAATGACCTCTTTCTCCAAGCCTCCTAGGTCCTCAAATCTAAGCAACCGCAAACCCTCCTTAAAAAACATCACAATCCCTTCCATAACCTCAGGTCTTGCAACAGCTATGTCTCAACACATGGAAACAACAACTACAACAACCAACATGTATAGCAACAAtcagatttcttcttcttcttcttcttcggatGATGCCAACAACACCAAAGAGGTCAAGCATTATAGAGGGGTTAGAAGGAGGCCTTGGGGGAAGTTTGCTGCAGAGATTCGTGACCCCAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCCAAGGCTTACGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGGGAGTCTGAAGAATCAGTTTCAAGCTGCATTAAGGTTGGcatgaagagagaaagagaggaagagagtgattttaataacaacaataataagcaGGTGAAGAAAGAAGAGTGCTCTCCGAAAGGGGTTTGCCCTTTGACTCCCTCTTGTTGGAAAGGATTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTGCCTCCTTTGTCACCCTTATCTCCACTAATGGTTGTTTGA 849 0.3958 MQSFEPNFTLCTSNTVEASISQPVQSSISQSDISITDYLLPQEVQFQDQVQVPMSNNNIPMNHTHLQMPQMTSFSKPPRSSNLSNRKPSLKNITIPSITSGLATAMSQHMETTTTTTNMYSNNQISSSSSSSDDANNTKEVKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEESVSSCIKVGMKREREEESDFNNNNNKQVKKEECSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3033 282 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Ssu7g3033 282 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Ssu7g3033 282 CDD AP2 142 201 IPR001471 GO:0003700|GO:0006355
Ssu7g3033 282 MobiDBLite consensus disorder prediction 117 135 - -
Ssu7g3033 282 MobiDBLite consensus disorder prediction 69 89 - -
Ssu7g3033 282 SUPERFAMILY DNA-binding domain 143 203 IPR016177 GO:0003677
Ssu7g3033 282 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Ssu7g3033 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 56 266 - -
Ssu7g3033 282 MobiDBLite consensus disorder prediction 117 145 - -
Ssu7g3033 282 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
Ssu7g3033 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 56 266 - -
Ssu7g3033 282 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Ssu7g3033 282 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3033 Ssu-Chr7 69391052 69391900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3033 58 275 AP2-EREBP Transcription Factor Family AT5G51190 46.087 1.42e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g3033 AP2 5.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3033 K09286 - gmx:100795866 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g3033 7 69391052 69391900 Ssu7g3033 7 69391052 69391900 ECH