Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3027 atGAAGGAAACAAGGACATGCAATGAGAACAATGAAGGGTGTTTGATGCTGTTTGGTGTGAACATTCTTGCTAAGAACCCTATAAGAGATGGTGACCCCAAATGTTTAAGTATGGTAAACCTCAGTTATTGCCATGGAGAGAAGGAGATCAATggcaataaagaaaattctgAAGGTGGATATTTGTCTGATATTCTTGTTCAAAACAAGAGACAACATGCCTTCCATGACAAGAGGAATAAGGGAAAACCATGGACCGAGAAAGAGCACAGGGATTTTTTGAGTGGTTTAAAGCATCTTGGAAAAGGTAATTGGAAGGAAATTTCAAGGATCCATGTGAGAACAAAGACTCCAACCCAAGTTGCAAGTCATGCACAAAAGTATTTTCTCAGAATGGGTGCATATGACACAAGGAAGCGTAGAAGAAGCCTTTTTGACATGTCACTTATTAGAATTCCTGGCAATATTTCTTTCACCCACTTCAAGTTACCTGAACAAGACGGTGATTCTCATAATTCGCCAATAAATGAGAACTTCGGCAATGTTCTTACAATTAACAGTTCATCTCAAACAGAAGATGATTCTCTAGATCTTCGGATAAGAATAGTCTCAGTGTGCCCTAAAATCAAAGCTAGGATCATCATTTGTGGACGTTGGAGCCATCAGTGTGAATTGAAGGCCttgtag 687 0.3799 MKETRTCNENNEGCLMLFGVNILAKNPIRDGDPKCLSMVNLSYCHGEKEINGNKENSEGGYLSDILVQNKRQHAFHDKRNKGKPWTEKEHRDFLSGLKHLGKGNWKEISRIHVRTKTPTQVASHAQKYFLRMGAYDTRKRRRSLFDMSLIRIPGNISFTHFKLPEQDGDSHNSPINENFGNVLTINSSSQTEDDSLDLRIRIVSVCPKIKARIIICGRWSHQCELKAL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3027 228 CDD SANT 84 129 IPR001005 -
Ssu7g3027 228 ProSiteProfiles SANT domain profile. 85 133 IPR017884 -
Ssu7g3027 228 PANTHER TRANSCRIPTION FACTOR KUA1 3 155 - -
Ssu7g3027 228 SUPERFAMILY Homeodomain-like 79 132 IPR009057 -
Ssu7g3027 228 PANTHER TRANSCRIPTION FACTOR KUA1 3 155 - -
Ssu7g3027 228 Gene3D - 83 133 - -
Ssu7g3027 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Ssu7g3027 228 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Ssu7g3027 228 SMART sant 81 131 IPR001005 -
Ssu7g3027 228 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 131 IPR006447 GO:0003677
Ssu7g3027 228 Pfam Myb-like DNA-binding domain 83 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3027 Ssu-Chr7 68823863 68827240 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu7g3027 Myb_DNA-binding 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3027 - - gmx:106794827 255.758