Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3017 atggcTCAGCGTTTGATGCTGACCACTGAGAGCGACAATAAGGAGCAAAACATGGCACAGGAGGCGGAGCTAGGGACAAGGACCCTTTTCCCTGTGATTGCTGATAAAGGAGGTAGAGTGCCTGATTTCAAGTTGGGGTTGTGGGGGAAGACTCAATGGCTGAACTTGTCCTTTCCAGAGCCTGATAGACAAAATGGACTGAAAACCTTGCAGCAGAAGCCACCTCATGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGTTCGCAGTACCGCGGTGTCACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAAGTTGCTGCAAGAGCATATGATAGGGCTGCTATAAAGTTTCGGGGAGTAGATGCTGATATAAACTTTAGTTTGAGTGATTACGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTCTTACTTCGTCGACAAATCAATGGAATCTCAAGGAGAAGTTCAACATACAAAAGTGCATTAGCCCTTCAGAAAGATGGTCAAGGAGAACCACGAATGGGACCATTTCTTGGCAAGACATTTTACCCAAAGTCATCCTtcaagtgtgatgatggaaaaGTGGAGGGCAGTTTTAAGTCCTGTTTCTATAAGGAAGAAATAATTGCAACTTCCAGCATAGCAGGCACTTGCCATAATCTTGATTTGAGCCTAGGGATTTCTCCATcttctaaaaaattgaagagtAATGACTATGGAGGAGGGTTTTCCTTTGGATGTATGGCTTGTAAGATACCCGAGGAAAGGGGAAATATGGAGAAGGCTATGGTAGACCGAACAAAAAATGTTCCTTTGCAAAATTTTTCCAACTTGGCTTGGCAACTTTGCAGCAATGGCAGCATTGCCTCAAGCCATTGCAATCAAATGCAGCATCATCAGGATTCGTCTCTTCTTCTAGCTGTCTCATCAACCACGCTTCCAATCAGCACACATATTAATTATGCCAACTATTTTGGCTTGGGCTCAACCACCGTACTCATCATTAACTCCCCAAGGTTGTAG 1098 0.4317 MAQRLMLTTESDNKEQNMAQEAELGTRTLFPVIADKGGRVPDFKLGLWGKTQWLNLSFPEPDRQNGLKTLQQKPPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQVAARAYDRAAIKFRGVDADINFSLSDYEEDLKQMRGLSKEEFVLLLRRQINGISRRSSTYKSALALQKDGQGEPRMGPFLGKTFYPKSSFKCDDGKVEGSFKSCFYKEEIIATSSIAGTCHNLDLSLGISPSSKKLKSNDYGGGFSFGCMACKIPEERGNMEKAMVDRTKNVPLQNFSNLAWQLCSNGSIASSHCNQMQHHQDSSLLLAVSSTTLPISTHINYANYFGLGSTTVLIINSPRL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3017 365 Gene3D AP2/ERF domain 89 148 IPR036955 GO:0003700|GO:0006355
Ssu7g3017 365 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 335 - -
Ssu7g3017 365 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Ssu7g3017 365 CDD AP2 89 145 IPR001471 GO:0003700|GO:0006355
Ssu7g3017 365 MobiDBLite consensus disorder prediction 64 91 - -
Ssu7g3017 365 Pfam AP2 domain 90 138 IPR001471 GO:0003700|GO:0006355
Ssu7g3017 365 ProSiteProfiles AP2/ERF domain profile. 90 146 IPR001471 GO:0003700|GO:0006355
Ssu7g3017 365 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 10 335 - -
Ssu7g3017 365 SMART rav1_2 90 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3017 Ssu-Chr7 68229536 68232872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3017 5 263 AP2-EREBP Transcription Factor Family AT4G36920 47.735 6.74e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g3017 AP2 9.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3017 K09284 - gmx:100776138 515.768