Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3006 ATGCTTAGACCATACACGTACCCCACGACATGCAAGAAGAGGTGGCGAATGGCTTTGAACGCCATCTCTTTCGTCAAGGCTCTTCTTCGTGTCTCCAAGAAAGCTTTTAACATCAGAACTCCGAGGCATTTGCACTCCTTCTCGTATATGGCCATTGATGTTGACCCAGAACACGACCATACCCCACCACGCGACGACCAACCCTTCGAGTTTTCCAAGGTTGATCCCAAACTGCTCAGTGACATGGTAAAGGACAAAAGGCTCGACTCTCTCACCCAACTTGGAGGCGTCAGAGAACTGGCCACACTTCTTGAAACCGACGTCAAGCGTGGCGTCAGAGACAACCAGGCTGATATTGATCACCGAAAACGTGTCCTTGGCGTGAATGTGTTCCAGAAACCTCCGTCCAaaggttttctttcttttgttcttgAAGCCTTTAAAGATGTCactattattatctttttggtttgtGCTGTGCTTTCCCTTGGCTTTGGGATCAACTTTAAACAATCTAGACAATTCCAGAAGCTTTCTGCCAAGAGTAGCAACATAGGAGTGGAGGTAGTACGAGGTGGCAGACACCAAAGCGTGTCAATCTTTGAGGTGGTGGTTGGAGACATTGCACACTTGAAGATTGGTGATCAGGTTTCGGCAGATAGGTTGTTTCTGGAGGGGCATTCGCTGAAGGTGGACGAATCTAGCATGACGGGGATTTGGCGTGATTGGAAAGCGGCTAGTTTCCACAGTATTATTTTGTTTCCCTGGACTTGA 774 0.4587 MLRPYTYPTTCKKRWRMALNAISFVKALLRVSKKAFNIRTPRHLHSFSYMAIDVDPEHDHTPPRDDQPFEFSKVDPKLLSDMVKDKRLDSLTQLGGVRELATLLETDVKRGVRDNQADIDHRKRVLGVNVFQKPPSKGFLSFVLEAFKDVTIIIFLVCAVLSLGFGINFKQSRQFQKLSAKSSNIGVEVVRGGRHQSVSIFEVVVGDIAHLKIGDQVSADRLFLEGHSLKVDESSMTGIWRDWKAASFHSIILFPWT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3006 257 Gene3D - 148 184 - -
Ssu7g3006 257 Gene3D - 185 238 - -
Ssu7g3006 257 PANTHER CATION TRANSPORTING ATPASE 167 238 - -
Ssu7g3006 257 PANTHER CATION TRANSPORTING ATPASE 9 167 - -
Ssu7g3006 257 SUPERFAMILY Calcium ATPase, transduction domain A 187 238 IPR008250 -
Ssu7g3006 257 Pfam E1-E2 ATPase 187 238 - -
Ssu7g3006 257 PANTHER CALCIUM-TRANSPORTING ATPASE 167 238 - -
Ssu7g3006 257 PANTHER CALCIUM-TRANSPORTING ATPASE 9 167 - -
Ssu7g3006 257 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 189 IPR023298 -
Ssu7g3006 257 SMART Cation_ATPase_N_a_2 90 167 IPR004014 -
Ssu7g3006 257 Pfam Cation transporter/ATPase, N-terminus 95 162 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3006 Ssu-Chr7 67828226 67829086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3006 13 238 Primary Pumps ATPases AT3G22910 42.578 1.41e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3006 K01537 - gmx:100784119 309.686