Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2995 ATGAACTGGACCAAGTCGGTGAGTTTAGACTATTTACTTGAAGAGCTGAAACTGGCTACAAAGGAGGAAATAGATTCTCGGTCTATCTATGTTGGAAATGTTGACTATGCTTGTACATCTGAACAACTCCGACAACATTTCCAAACATGTGGAACTGTGAATAGAGTGACAATTCCAACAAACAAACATGGTCAGCCCAAAGGATTTGCATATATTGATGCTGTTTGCAGTGCTCTCACTTTAAATGAATCAGTACTGCATGGTCGAAAACTAAAGGTCTGTCCTAAGCATACAAACATTCCGGGAATGAAACAGTATCGTGGAAGAAGGCCattcaatttaagatttagaaCACCTTTATTCTATCCTCCATCTGGTTATGGAAACAAGAACACGTTTCTTGATTTGCATACGAAAGCTAATGCTCTTGCCCTTTTCAACTCTAGATGTGTGGCATGGACAATTGACATTGACCAACTAGTTACTGTACTCATaaaACTCATAAAAGAagttatatga 519 0.3719 MNWTKSVSLDYLLEELKLATKEEIDSRSIYVGNVDYACTSEQLRQHFQTCGTVNRVTIPTNKHGQPKGFAYIDAVCSALTLNESVLHGRKLKVCPKHTNIPGMKQYRGRRPFNLRFRTPLFYPPSGYGNKNTFLDLHTKANALALFNSRCVAWTIDIDQLVTVLIKLIKEVI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2995 172 SMART rrm1_1 28 94 IPR000504 GO:0003723
Ssu7g2995 172 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 133 - -
Ssu7g2995 172 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 17 133 - -
Ssu7g2995 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 73 IPR000504 GO:0003723
Ssu7g2995 172 SUPERFAMILY RNA-binding domain, RBD 22 119 IPR035979 GO:0003676
Ssu7g2995 172 Gene3D - 21 102 IPR012677 -
Ssu7g2995 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 73 IPR000504 GO:0003723
Ssu7g2995 172 CDD RRM_II_PABPs 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2995 Ssu-Chr7 67318253 67332706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2995 28 94 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 1.02e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2995 K14396 - vvi:100242522 163.696