LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2982	ATGAAGAACTCTGCTTCAGATAACGGTATGTTCATTGAGAGCGATGAGGATGTGGAGAAGGATCTGCAGAAAGACGATAATGATGGAAACGATTCGAATTATTCGAATGACTCCAGTGAAAACATGTCACCGAAACACAGCAGTTACAGCATCGCATGGCCTCAAAGTTTCAGGCAATCCATTGATCTATATGGTAGTGTACCATCACCAAATATTGGATTTCTGGGCACCCCATCACTGTCAACATTAAGCagttcttttatttcttcatctttGACAAGGAGGCACACTCCGGAAATACTACCACCAGAGAAAAAACCACTCTTGCAACCCAAAGAAGAGGACCAACCGCGTCATACCTTGCTTCCTTCCTATCCATCTAGGAAGTCTTCCATTAGGATAGATGTTTCCACGGTTTCCCATGAAGTTCACATTCCTGGCCAATGCACTTTTGGACAAGCTATACTTAATGGCATAAATGCCCTTTGTGGTGTAGGAATCCTTTCAACCCCTTATGCCCTTAAAGAAGGTGGATGGGCTGGTCTTTCTATCTTGTTATTGTACGCAGTTTTTTCGTTTTATACCGGGTTGCTCTTGCGTTACTGCTTGGATAGTGAACCTGGACTTGAGACATACCCTGACGTTGGTCAAGCTGCTTTTGGTACTCTTGGACGTGTTATCATTTCCATAATATTATACATGGAATTATATGCTGCTTGTATTGAGTACATAATTGTGGAGAGCGACAACTTGTCTACATTATTTCCAAATGCACACATTAGTTTGGGTGGAATTGAAATCAATTCACACATTTTATTTGCAATAGTGACCAGCGTTGCTCTTCTTCCTACTGTTTGGCTCCGTGACCTACGCATTCTCAGTTACGTCTCAGCTTGCGGGGTTATTGCAACGATTTTAGTGGTTCTCTGCTTGTTCTGGGTTTGCTTGGTAGACAACGCTGATATTCATGCCAAgggaacaacaacaacattcaaTCTTGCAACTTTTCCTGTTGCTATGGGTCTCTATGGTTATTGCTACGCCGGGCATGCTGTATTCCCAAACCTCTATACTGCCATGGCAAAACGGAGTCAATTCCCTGCAGTGCTCTTAATAtgTTTTGCAATTTGTACAACTATGTATTGTGCAGTAGCTATTATGGGTTACACAGCGTTTGCAGAAGGAACACTCTCCCAGTATACTCTTAACATGCCCCAACACTTAGTGGCCGCTAAGATTGCTGTGTGGACTACGGTGGTTAATCCATTTGCCAAATATCCTTCATATGCGCCatataataaatgcatttatGCTTTCTGA	1320	0.4106	MKNSASDNGMFIESDEDVEKDLQKDDNDGNDSNYSNDSSENMSPKHSSYSIAWPQSFRQSIDLYGSVPSPNIGFLGTPSLSTLSSSFISSSLTRRHTPEILPPEKKPLLQPKEEDQPRHTLLPSYPSRKSSIRIDVSTVSHEVHIPGQCTFGQAILNGINALCGVGILSTPYALKEGGWAGLSILLLYAVFSFYTGLLLRYCLDSEPGLETYPDVGQAAFGTLGRVIISIILYMELYAACIEYIIVESDNLSTLFPNAHISLGGIEINSHILFAIVTSVALLPTVWLRDLRILSYVSACGVIATILVVLCLFWVCLVDNADIHAKGTTTTFNLATFPVAMGLYGYCYAGHAVFPNLYTAMAKRSQFPAVLLICFAICTTMYCAVAIMGYTAFAEGTLSQYTLNMPQHLVAAKIAVWTTVVNPFAKYPSYAPYNKCIYAF	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2982	439	MobiDBLite	consensus disorder prediction	13	31	-	-
	Ssu7g2982	439	MobiDBLite	consensus disorder prediction	32	48	-	-
	Ssu7g2982	439	PANTHER	OS05G0424000 PROTEIN-RELATED	22	435	-	-
	Ssu7g2982	439	Pfam	Transmembrane amino acid transporter protein	149	427	IPR013057	-
	Ssu7g2982	439	PANTHER	TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN	22	435	-	-
	Ssu7g2982	439	MobiDBLite	consensus disorder prediction	98	119	-	-
	Ssu7g2982	439	MobiDBLite	consensus disorder prediction	94	126	-	-
	Ssu7g2982	439	MobiDBLite	consensus disorder prediction	1	48	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2982	Ssu-Chr7	67027044	67042015	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g2982	1	426	Amino Acid or Auxin Permease AAAP Family	AT2G39130	62.557	0.0	553

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g2982	K15015		-	gmx:100798108	704.516