Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2976 ATGTATTGCAATTTCAAGGAGCATGCTGCTGAGTATGTTAAGCAGGCAGTTCGCGAGGACGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTGGAATACTTACGGGCCCATTTGAAGTATGAGAAGCACCCGAAGATCAAGGAGGCAATAACTCAGAAATTTGCTCAATACTTGAGGAGGGCAGAGGAGATTCAAGCCATTCTTGACGCGGGAGGTGGTGAAGCGAACTTGAATAGAGATGCGGCCGGTTCTGTGAGACCAAAGACAAGTGGGGGAGGAGAGAAAGACAAGGAGGATCCTGAGCAAGCAAAGCTGAAGGCTGGTCTTGATTCTGTCATAATCAGAGAGAAACCAAATGTCAGATGGAGTGATATTGCGGGTCTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTGATATTGCCTGCTAAGTTCCCACAATTTTTCACTGGTAAGAGACAACCATGGAGAGCATTTCTGTTGTATGGTCCACCTGGAACAGGGAAATCATACTTAGCAAAGGCAGTAGCAACAGAAGCAGACTCTACATTCTTCAGTGTTTCATCATCAGATCTTGTTTCTAAGTGGATGGGTGAGAGTGAAAAGCTGGTTGCAAGTCTTTTCCAAATGGCTCGTGATAATGctccttcaattatttttattgatgaaatagATTCTTTATGTGGTCAACGAGGTGAAGGTAATGAAAGTGAAGCGTCTAGAAGAATTAAAACTGAACTTTTAGTTCAAATGCAGGGTGTGGGGCACAATGATCAGAAAGTTCTCATTCTTGCAGCCACAAATACTCCCTATGCTCTTGATCCGGCCATTCGAAGACGCTTTGACAAACGTATATATATCCCTCTCCCAGACCTGAAGGCAATGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCACAAACTAACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACAGATGGATTTTCTGGTTCAGATATTGCTGTTTGTGTTAAGGATGTACTTTTTGAACCTGTCCGGAAAACACGAGATGCTAAGTTCTTCCGGAAAACCTCTAAAGGAATGTGGGTTCCTTGTGAACCTACTCGGCGAGGAGCTGTTAATATTAGCCTGGAGGAACTTGATGCCCAGGGCCTTGCTTCAATGGTAAATGCTGGGGTGGGAAACTGA 1194 0.4271 MYCNFKEHAAEYVKQAVREDDAGNYKKAFTLYMNALEYLRAHLKYEKHPKIKEAITQKFAQYLRRAEEIQAILDAGGGEANLNRDAAGSVRPKTSGGGEKDKEDPEQAKLKAGLDSVIIREKPNVRWSDIAGLESAKQALQEAVILPAKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVASLFQMARDNAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLILAATNTPYALDPAIRRRFDKRIYIPLPDLKAMQHIFKVHLGDTPHKLTEKDFEELAQKTDGFSGSDIAVCVKDVLFEPVRKTRDAKFFRKTSKGMWVPCEPTRRGAVNISLEELDAQGLASMVNAGVGN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2976 397 PANTHER AAA DOMAIN-CONTAINING 1 391 - -
Ssu7g2976 397 MobiDBLite consensus disorder prediction 83 108 - -
Ssu7g2976 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 349 IPR027417 -
Ssu7g2976 397 SUPERFAMILY MIT domain 4 77 IPR036181 -
Ssu7g2976 397 SMART AAA_5 160 296 IPR003593 -
Ssu7g2976 397 Gene3D - 123 295 IPR027417 -
Ssu7g2976 397 ProSitePatterns AAA-protein family signature. 266 285 IPR003960 GO:0005524|GO:0016887
Ssu7g2976 397 Pfam ATPase family associated with various cellular activities (AAA) 165 294 IPR003959 GO:0005524|GO:0016887
Ssu7g2976 397 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Ssu7g2976 397 Gene3D - 6 75 - -
Ssu7g2976 397 SMART smart 2 79 IPR007330 -
Ssu7g2976 397 CDD AAA 131 294 - -
Ssu7g2976 397 Gene3D - 296 388 - -
Ssu7g2976 397 PANTHER PROTEIN SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 1 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2976 Ssu-Chr7 66718148 66729253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2976 159 352 Calmodulin-binding Proteins AT3G56690 36.224 3.10e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2976 K12196 - zju:107413237 655.595