Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2952 ATGTACAGTGGCGCTGAAGCCGAAGCCGAATCTGAATCTGAGCACAATATGGGTGGTGATGAGGAAGAACAAGGCTCGTTCAAGAGCTGGGCAAAACAAACGGAGGAGAGCTACCAGTTGCAGCTCGCACTCGCCCTTCGTCTTTCTTCTTACTCCGCTTCTTCCTCCGATCACCCCTCTTCCTCCGCCCAGACACTTTCACACCGTTTTTGGGTAAATGGTTGTTTGCCATACTCTGACAAAATTCTAGATGGCTTTTACCTAATCCATGGGATGGATGCATATACATGGACTATAAGTACTGATCTGCAGAGTGTTGGTATGATTCCATCATTTGAATCGCTGATGTCAGTTGAACCTGGTGATGACTCGTCAATTATAGTGGTTGCTATTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAGCAGGGTAGTAAGTCTTTCAAATAACTGGATTACTACGAAAGATGCGACTGATCAGCTTGCAAATCTTGTTTGCAGTAGGATGGGGGGGGGATCTTTAATTGAGGAAAATTTAGGTACACGCTGGAAGGAATGCACCCAACTTCTTAAAAGCTGCCTGCATTCTGTCATTCTTCCAATTGGAAGCTTACCCATTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAaGTGTTAGCTGACTTAATCAATCTTCCATGCCGTATTGCTAAGGGCTGCAAGTATTGTAGGAAAGATGTGGGTGCTTCATGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTTGGAAGGCCTGGGGCAACATGCCAACCTGATTCTACACTGAATTCTGCATCTTCAATGTTGGTCCCTTCACCATTATGTCATCCAAAGTTCAAACCAGTTGAAACAGCTGAATATACAAAGACACTAGCCCAATTGTATTTCTTGGACAGTCAAGCACTGCATCTTGTATTTGATACCACATCAGGACCTGCTGTTAATCATAGTGACAGAATGGATATACAGCAAACTGAAGCTTTGGGTGCAAATGCAAATTATGCTGCTGGAAACGGCCATCTGGTTGCTTTGATTCCTGGTGCTGAGGAATATGTGTCCTTCAATGAAGCAAACCAGTCAGTAATGGATTATCCAAGTCATGAAGTTGATCTTGACGAGGAGGATCTGGATATTCCATGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTTAAAGTGCAAGGTTTTGATCCTGGACGATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTACGGCATCCAAACATTGTACTCTTGATGGGTGCAGTTGTTCAACCCCCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGCAGTTTGTATGAACTTCTGCATATGCCCAATGTTGGATCATCACTTAGTGAGAGACGTCGTTTAAGTATGGCTTATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTAGGTGACTTTGGCCTTTCACGTACAAAGGCAAACACATTTCTTTCATCTAAAACCGCAGCCGGGACTCCTGAATGGATGGCACCCGAAGTCATCCGAGGTGAACTGTCAAACGAAAAATGTGATATATTCAGCTTTGGTGTAATCTTGTGGGAACTAGTGACCCTGCAACAACCATGGAGACAATTAAATCCTTCACAGGTTGTTGCAGCAGTTGGTTTTATGGGCAAAAGGCTCGAGATTCCAAGGCATGTGAATCCTGAAGTGGCTGCATTGATTGAGCTCTGCTGGGCCACGGAACCCTCGAGACGGCCTTCTTTCTCctatattatgaaatatttgcAGCAAATAATTGCTGATGCTAAAGGGTGA 1977 0.431 MYSGAEAEAESESEHNMGGDEEEQGSFKSWAKQTEESYQLQLALALRLSSYSASSSDHPSSSAQTLSHRFWVNGCLPYSDKILDGFYLIHGMDAYTWTISTDLQSVGMIPSFESLMSVEPGDDSSIIVVAIDKSRDPGLRELQSRVVSLSNNWITTKDATDQLANLVCSRMGGGSLIEENLGTRWKECTQLLKSCLHSVILPIGSLPIGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDVGASCIVQFGSDREYMIDLVGRPGATCQPDSTLNSASSMLVPSPLCHPKFKPVETAEYTKTLAQLYFLDSQALHLVFDTTSGPAVNHSDRMDIQQTEALGANANYAAGNGHLVALIPGAEEYVSFNEANQSVMDYPSHEVDLDEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDPGRFEEFLKEVSLMKRLRHPNIVLLMGAVVQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSERRRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVGDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDIFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPRHVNPEVAALIELCWATEPSRRPSFSYIMKYLQQIIADAKG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2952 658 Pfam Protein tyrosine and serine/threonine kinase 396 649 IPR001245 GO:0004672|GO:0006468
Ssu7g2952 658 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 20 334 - -
Ssu7g2952 658 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 367 656 - -
Ssu7g2952 658 MobiDBLite consensus disorder prediction 1 32 - -
Ssu7g2952 658 ProSiteProfiles Protein kinase domain profile. 395 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2952 658 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 367 656 - -
Ssu7g2952 658 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 20 334 - -
Ssu7g2952 658 MobiDBLite consensus disorder prediction 8 29 - -
Ssu7g2952 658 PRINTS Tyrosine kinase catalytic domain signature 620 642 IPR001245 GO:0004672|GO:0006468
Ssu7g2952 658 PRINTS Tyrosine kinase catalytic domain signature 510 528 IPR001245 GO:0004672|GO:0006468
Ssu7g2952 658 PRINTS Tyrosine kinase catalytic domain signature 469 482 IPR001245 GO:0004672|GO:0006468
Ssu7g2952 658 PRINTS Tyrosine kinase catalytic domain signature 576 598 IPR001245 GO:0004672|GO:0006468
Ssu7g2952 658 PRINTS Tyrosine kinase catalytic domain signature 557 567 IPR001245 GO:0004672|GO:0006468
Ssu7g2952 658 SUPERFAMILY Protein kinase-like (PK-like) 374 649 IPR011009 -
Ssu7g2952 658 Gene3D Transferase(Phosphotransferase) domain 1 474 657 - -
Ssu7g2952 658 SMART serkin_6 395 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2952 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Ssu7g2952 658 ProSitePatterns Protein kinases ATP-binding region signature. 401 422 IPR017441 GO:0005524
Ssu7g2952 658 CDD STKc_MAP3K-like 401 649 - -
Ssu7g2952 658 Gene3D Phosphorylase Kinase; domain 1 388 473 - -
Ssu7g2952 658 Pfam Ethylene-responsive protein kinase Le-CTR1 63 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2952 Ssu-Chr7 65706458 65728715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2952 30 656 MAP Kinase Kinase Kinase AT5G03730 58.295 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu7g2952 PK_Tyr_Ser-Thr 5.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2952 K14510 - gmx:100807496 1183.7