Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2949 ATGGCGAAGGGCGAAGACGCTGTGCGAaggaagaagaacaaaaagCTTCGAAAGAAGAACAATAGCTCTTCCTCAGTCTCCGCCAAGGTAGCCGCCGTTATCGCCGCCAAGAAGCGCCGTAAGGCCGGTAAACGCCGCATTTGCCAGGGGATGTGCTTTAGTCTACCTACTCTGGATGATCCATTCAATGATCGAGGTGGGAAAGAGGAATTCAAAACGAAGGGTCctaaaaagaaaacacattCAAAACCAAAAGACGAAATGGTTTGTCTTAATGGGAAGAGTGTAGCTGGAAAGAAAGGTGCAGTTGGTGGGAGGAATATTGCACAGGAATTGAATGATTTACAAAGGGAAAATGAGTCTGTCATAGCCAACAATAATGTGGGTCAGAAATGTATCATTAACtcagaaaggaaaaatattgagGTGACTGAGATTGCTCATCTTTGTGGTGCCCAACAGCGTGATTGTGACATTTCAGAGTTCCCTTCtaagtttgttttttggtgTCTAAGTTCAATTGAAAATGCATTGCGACATGGTGATGCCTACACTGATGGAGAGGGTAACTCTTTCTTTCTGAATCCatggggattagaatttttgAAGTGTTATTCTACTGGGAAAGATTTGATGGAGACCAGTGGAACCTCTGCTACTACTGAGCAAATTGCGTGGATGGTTTCTGGTGCAGCTGATACTTTTGtcagaaaagagaaagaaggctTGTCCTTTGCCggtccttttcttttgttccttGTGCCTTCCCAAGAAAAAGCTGTCCAGGTTCGAACAGTTTGCAAGCCTTTGAAATCTGTTGGAATACATGCAGTGAGTATTCATCCAGGTGCTTCCTTAGATCGTCAGATTCAAGGTCTGAAAACTTGTGAACCTGAGTTTCTTGTTTCTACTCCTGAGAGGCTTTTGGAGCTTGTTTCTATGAAGGCAATTGATATTTCTGGGGTTTCTATGCTGGTTATTGATGGGCTTAATACTATTTGTAGTACTGGCCACACTGATACAATAAAGTCCATCAAGAAGTGTATTTCTGGCAATCCCCGTCTTGTGATTTTCAATGATTGCTTCAGCCACATGTCTATCCCATTGGTTCGGTATCTTCTGACAGGATCAATTTGTAGACTCTCTCTCAATAATTCAATTACCAGCCTAAGTTCATGCATTATCCAGTCTGTTAAACTCTGTACGTCAGAAGAAGATAAAGTTGTCAAGAGCATCGAAGCCCTGGATCAGTTTCAGAGCAGCCATACTCAGAATTCAAACATGCTATATATTTTAAGGAAAGATGTCAAGTGCCCAAAATTGGTCAAGACTCTCAAATCCAAGGGTTGTTCCATTTCACTTGATTCTGATGCAGCAAGTTTTAATGATAGTGTGGATTCAGACAGCAGAGCAGTGGTTTCTTTGATTGATTTGGAGCATATCTCTACTACCGATATAGGGACGTATGATGTAGTAGTCCTACCTAGTTTTGTACCCTCCAGGGACACTTACGTGCATATTTTGACAAAGATGGCTCGCCAAAGTGTCAATGGTGTATTGCACAGTTTCTTGACAAAAGGAGATACAGAACTTGCTGTACCTCTCATTGCAGTTCTTGAACAATGCGGGCAGGAAGTGCCTCAGACCCTGCAGGATCTGCATCATACATCAAACATGTTGGAAGATTGA 1689 0.3967 MAKGEDAVRRKKNKKLRKKNNSSSSVSAKVAAVIAAKKRRKAGKRRICQGMCFSLPTLDDPFNDRGGKEEFKTKGPKKKTHSKPKDEMVCLNGKSVAGKKGAVGGRNIAQELNDLQRENESVIANNNVGQKCIINSERKNIEVTEIAHLCGAQQRDCDISEFPSKFVFWCLSSIENALRHGDAYTDGEGNSFFLNPWGLEFLKCYSTGKDLMETSGTSATTEQIAWMVSGAADTFVRKEKEGLSFAGPFLLFLVPSQEKAVQVRTVCKPLKSVGIHAVSIHPGASLDRQIQGLKTCEPEFLVSTPERLLELVSMKAIDISGVSMLVIDGLNTICSTGHTDTIKSIKKCISGNPRLVIFNDCFSHMSIPLVRYLLTGSICRLSLNNSITSLSSCIIQSVKLCTSEEDKVVKSIEALDQFQSSHTQNSNMLYILRKDVKCPKLVKTLKSKGCSISLDSDAASFNDSVDSDSRAVVSLIDLEHISTTDIGTYDVVVLPSFVPSRDTYVHILTKMARQSVNGVLHSFLTKGDTELAVPLIAVLEQCGQEVPQTLQDLHHTSNMLED 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2949 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 1 561 - -
Ssu7g2949 562 Gene3D - 239 388 IPR027417 -
Ssu7g2949 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 358 IPR027417 -
Ssu7g2949 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 561 - -
Ssu7g2949 562 MobiDBLite consensus disorder prediction 1 29 - -
Ssu7g2949 562 MobiDBLite consensus disorder prediction 63 85 - -
Ssu7g2949 562 Pfam DEAD/DEAH box helicase 245 349 IPR011545 GO:0003676|GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2949 251 553 Eukaryotic Initiation Factors Gene Family AT1G72730 20.126 8.35e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2949 - - gmx:100809099 890.952