Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2946 ATGTGGGACCACCTCCTTTTAATATCAGCGGTCCACGTGTCCGTCGACGTTATCAACGTTAATTTTGCTTCTGACCGGGTAATCATGGCGCAGAGTAATTGGGAAGCGGATAAGATGCttgatgtttatatttatgattatttggtGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGGTGAGAGATAA 225 0.3956 MWDHLLLISAVHVSVDVINVNFASDRVIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVGER 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2946 74 ProSiteProfiles LIS1 homology (LisH) motif profile. 36 68 IPR006594 GO:0005515
Ssu7g2946 74 PANTHER OS03G0860900 PROTEIN 31 71 - -
Ssu7g2946 74 SMART Lish 36 68 IPR006594 GO:0005515
Ssu7g2946 74 Pfam LisH 38 64 IPR006594 GO:0005515
Ssu7g2946 74 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 31 71 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2946 Ssu-Chr7 65482175 65483147 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ssu7g2946 LisH 2.1e-09 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2946 - - var:108326218 105.531