Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2942 ATGAGAGAAGAGGACTCAAATTGGTTCTCAAGGTGGGAAGAGGAGCTCCCTCCCCCAGAGGAACTCATGCCCTTATCCCAAACCCTAATTACCCCTGACCTTGCCATAGCCTTTGACATAACAAACCCctcccaacaacaacaacaacagcaacaacaatatTCACAACAGGTACAAGAACAACAGTTTCCTCATCAAGCGCCCTCTTCGTCGAACCCGACCGCGGACGAGGAACCCGCCCGCACGCTGAAGCGGCCCCGCCTGGTGTGGACCCCACAGCTCCACAAGCGCTTCGTGGACGCCGTGGCCCACTTGGGCATCAAGAACGCCGTGCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGGTTGACCCGAGAAAACGTCGCCAGCCACTTGCAGAAATACCGCCTCTATCTGAAGCGCATGCAGGGGCTGTCCTCCGGCGGCGGAGGCGCAGCCGACGCCGCCACCGATCGCCTGTTCGCCAGCTCGCCGGTGCCGCCGCATTTCCTGCATCCCGCGGCGGCGCGGCCAGGCTCCGACCATTACTTGCCGTTTGTGTCGGTGCCGGCGTTGCATCAGCAGCAGCAGCGCCACCACCAGCACATGGCGGTGGCGGCGAGTCACCGCCATTTCGGTTCGCTGCCGAATGGGCACTTTGAGGTTCCCTTTCTGTCGAGAATGGGGGCTCCGGTGCCGGGTTACGCGGAGGACGTGGAATCCGGAGGGAGGAAGGTTCTTACTTTGTTTCCGAATGGAGATGACTGA 771 0.585 MREEDSNWFSRWEEELPPPEELMPLSQTLITPDLAIAFDITNPSQQQQQQQQQYSQQVQEQQFPHQAPSSSNPTADEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGAADAATDRLFASSPVPPHFLHPAAARPGSDHYLPFVSVPALHQQQQRHHQHMAVAASHRHFGSLPNGHFEVPFLSRMGAPVPGYAEDVESGGRKVLTLFPNGDD 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2942 256 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 256 IPR044841 GO:0003700|GO:0006355
Ssu7g2942 256 SUPERFAMILY Homeodomain-like 82 142 IPR009057 -
Ssu7g2942 256 MobiDBLite consensus disorder prediction 40 77 - -
Ssu7g2942 256 Pfam Myb-like DNA-binding domain 89 137 IPR001005 -
Ssu7g2942 256 Gene3D - 82 144 - -
Ssu7g2942 256 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 138 IPR006447 GO:0003677
Ssu7g2942 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 141 IPR017930 -
Ssu7g2942 256 MobiDBLite consensus disorder prediction 40 86 - -
Ssu7g2942 256 MobiDBLite consensus disorder prediction 1 23 - -
Ssu7g2942 256 MobiDBLite consensus disorder prediction 1 18 - -
Ssu7g2942 256 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2942 Ssu-Chr7 65217422 65218192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2942 1 256 G2-like Transcription Factor Family AT3G10760 51.765 1.96e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu7g2942 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2942 - - gmx:100816747 369.777