Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2935 ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTTGTCTGGGACGGCGAGATATGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTTCATGTTAATCCTTTTGACTTCTTTGGAATGGACAACAGTGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACTTTCTCTGCCTTTATGAGGCATCAAATGGCAGATCGGGGCCGAAACCGTGACATCAGGGCACGAACAGATTTAAATCCTGAACACATTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATTCCTTTCAGATTGTCCGGACATGGTGGCTTTGAAGCTCTATTTAATGGAACTCCGGGAATCGGCCTGACACGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCACCAGCATCGAGGTCCTCAATCGATGCAATGCCTACCATCAAGATCACGCAGAGGCATCTTCGTTCAGATTCACATTGTCCAGTGTGCAAAGATAAATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCTGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAGCTGCCGCTGCAAGGATTGAGTAGTAACCGTGGCACAATTGGTAGAAGTAGAAGTGGAAGGGTAAGTGGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCGTTCTCCTTTTTGTGGCCTTTCCGTTCTTCTCATTCTAGCAGTAACGATGAAGCCACCGGAAGCAGCACACCAACACCAACTATCCCTGAGAATAGCCATCATGCAGGGTATTCTGGGTGGccatttgaatga 921 0.4615 MSNSRNTHWCYSCRRPVCLGRRDMVCPSCNEGFVHELNDMVHVNPFDFFGMDNSEERDQRLGLMETFSAFMRHQMADRGRNRDIRARTDLNPEHIAGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPLQGLSSNRGTIGRSRSGRVSGSGRESQGRRNPFSFLWPFRSSHSSSNDEATGSSTPTPTIPENSHHAGYSGWPFE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2935 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Ssu7g2935 306 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Ssu7g2935 306 SMART ring_2 186 226 IPR001841 -
Ssu7g2935 306 SUPERFAMILY RING/U-box 166 233 - -
Ssu7g2935 306 Pfam Ring finger domain 185 227 IPR001841 -
Ssu7g2935 306 MobiDBLite consensus disorder prediction 235 306 - -
Ssu7g2935 306 CDD RING-H2_RNF126_like 186 227 - -
Ssu7g2935 306 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Ssu7g2935 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 291 - -
Ssu7g2935 306 MobiDBLite consensus disorder prediction 235 260 - -
Ssu7g2935 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 291 - -
Ssu7g2935 306 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2935 Ssu-Chr7 65020036 65020956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2935 121 231 C3H Transcription Factor Family AT5G01980 45.217 1.83e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2935 K11982 - gmx:100787523 573.933