Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2927 ATGCCATCTCTTTCGTCAAGGCTCTTCTCCGTGTCTCCAAGAAAGCTCTTAACATCAGAAGTCCGAGGCATTTGCGCTCCTTCTCGTATATGGCCATTGATGTTGACTCAGAACACAACCATACCCGGCCCACCACGCGACGACCAACCCTTCGAGTTTTCCAAGGTTGATCCTAAACTGCTCAGTGACATGGTAAAGGACAAAAGGCTCGACTCTCTCACCCAACTTGGAGGCGTCAGAGAACTGGCCACACTTCTTGAAACCAACGTCAAGTGTGGTGTCAGAGACAACCAGGCTGATATTGATCACCGAAAACGTGTTCTTGGCGTGAACGTGCTCCAGAAACCTCAGTCCAaaggttttctttcttttgttcttgAAGCCTTTAAAGATGCCACTATTATTATCCTTTTGGTTTGTGCTGTGCTTTCCCTTGGCTTTGGGATCAAGCAACATGGACGATGGAGACAATTCCAGAAGCTTTCTGCCAAGATTAGCAACATAGGAGTGGAGGTAGTACGAGGTGGCAAACGCCAAAGCGTGTCAATCTTTGAGGTGGTGGTTGGAGACATTGCGCACTTGAAGATTGGTGATCAGGTTCTGGCGGATGGGTTGTTTCTGGAGGGGCATTCGCTGAAGGTGGACGAATCTAGCATGACGGGGATTTGGCGTGATTGGAAAGCGGCTAGTTTCCACtgtattattttgtttcccTGGACTTGA 723 0.4647 MPSLSSRLFSVSPRKLLTSEVRGICAPSRIWPLMLTQNTTIPGPPRDDQPFEFSKVDPKLLSDMVKDKRLDSLTQLGGVRELATLLETNVKCGVRDNQADIDHRKRVLGVNVLQKPQSKGFLSFVLEAFKDATIIILLVCAVLSLGFGIKQHGRWRQFQKLSAKISNIGVEVVRGGKRQSVSIFEVVVGDIAHLKIGDQVLADGLFLEGHSLKVDESSMTGIWRDWKAASFHCIILFPWT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2927 240 Pfam E1-E2 ATPase 170 221 - -
Ssu7g2927 240 Pfam Cation transporter/ATPase, N-terminus 77 144 IPR004014 -
Ssu7g2927 240 PANTHER CALCIUM-TRANSPORTING ATPASE 156 221 - -
Ssu7g2927 240 Gene3D - 68 223 - -
Ssu7g2927 240 PANTHER CATION TRANSPORTING ATPASE 156 221 - -
Ssu7g2927 240 PANTHER CATION TRANSPORTING ATPASE 52 153 - -
Ssu7g2927 240 SUPERFAMILY Calcium ATPase, transmembrane domain M 77 167 IPR023298 -
Ssu7g2927 240 SMART Cation_ATPase_N_a_2 72 149 IPR004014 -
Ssu7g2927 240 PANTHER CALCIUM-TRANSPORTING ATPASE 52 153 - -
Ssu7g2927 240 SUPERFAMILY Calcium ATPase, transduction domain A 170 221 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2927 Ssu-Chr7 64602600 64603389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2927 55 221 Primary Pumps ATPases AT3G22910 46.667 3.59e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2927 K01537 - gmx:100784119 239.195