Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2923 ATGAGCACCGAAAGCCAGGTTTGCAAGTCCGAGGCTTTGATTTCATTCCACACTTGTGAAAGAGCTCTCTTTGGTTCGGTCAAAAAGCACAATCATAAGTATCAAAGACCACACACAAAAACTGAAACTACCAGATACACACtttcacacacatacacactaTTTCTTGTTACCATCACTCACCTCACACCTAGCAATCTATCTATGATGCAGCATCAGATTGAGATGGAAAACTCTAAGCTCTTTCAATTCCTCACAAAAAGCAACGAATCTTTCTTCAACTCTGCATCATATGGCCTACCTGATGCACCTGCATCATCAACCATGCAACACAGCTTCTCTAGTTCCTTTTCCTATTACCCTTTGGAAGCATCTGAAGCTCCATCTGATGAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCtgagaagagaagaagggaaAGAATCAACTCCCACCTCGATAAGCTTCGCACTCTTCTTCCTTGTAATTCCAAGACGGACAAGGCTTCACTTCTGGCTAAGGTGGTCCAAAGGGTGAAAGAGTTGAAGCAGCAAATATCTGAAATAACCGAATCCGAAACGTTTCCTTCGGAGACCGACGAGATCTCTGTTCTGTCCACCAGCGGTGACGAAAACGGCGGTGACGGACGGCTCATATTCAAGGCCTCTCTGTGCTGTGAGGACCGCTCTGACCTCATCCCTGACCTCAACGAAATCCTCAGGTCTTTGCACCTGAAAACGCTCAGAGCCGAAATGGCAACGCTCGGAGGAAGAACCCGCAACGTTCTCGTGGTGGCCACGGATAAAAACCACAGCGTTGAGTCAATCCAGTTCCTGCAGAACTCGTTGAAGTCTCTGCTAGAACGCTCCAATTCTAACGACAGATCCAAACGACGCCGTGGCTTAAGCCGAAAGTTCATCGCTTAA 936 0.4519 MSTESQVCKSEALISFHTCERALFGSVKKHNHKYQRPHTKTETTRYTLSHTYTLFLVTITHLTPSNLSMMQHQIEMENSKLFQFLTKSNESFFNSASYGLPDAPASSTMQHSFSSSFSYYPLEASEAPSDEDKALAALRNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKQQISEITESETFPSETDEISVLSTSGDENGGDGRLIFKASLCCEDRSDLIPDLNEILRSLHLKTLRAEMATLGGRTRNVLVVATDKNHSVESIQFLQNSLKSLLERSNSNDRSKRRRGLSRKFIA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2923 311 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 77 309 - -
Ssu7g2923 311 SMART finulus 142 191 IPR011598 GO:0046983
Ssu7g2923 311 CDD bHLH_AtAIG1_like 131 207 - -
Ssu7g2923 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Ssu7g2923 311 Pfam Helix-loop-helix DNA-binding domain 140 185 IPR011598 GO:0046983
Ssu7g2923 311 PANTHER TRANSCRIPTION FACTOR BHLH30 77 309 IPR045847 GO:0003700|GO:0006355
Ssu7g2923 311 Coils Coil 175 195 - -
Ssu7g2923 311 Gene3D - 132 196 IPR036638 GO:0046983
Ssu7g2923 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2923 Ssu-Chr7 64344615 64346389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2923 119 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 70.166 2.71e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2923 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2923 - K22484 gmx:100790009 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2923 7 64344615 64346389 Ssu7g2923 7 64344615 64346389 ECH