Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2912 ATGATGAGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGATATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTTAAGGAGAGATGGGATTGCAGAGAGGTTGTTCTCTTGCAGATTGAGTCGATGTTTGGGGTGTGAGAGGGTGGAGTTGGCTGTGTCAGtggatgatgatggtggtgaaggtggtggtggttgcAAGAGTGGTTTTGATGGGGATGGGGCTGAGTTTGAGTTTGAAGCCGGTGCAAGTAAAGAGAGCAAGGTCAACATTACTGGAGATGATCCTGGAGAGAAGAACATGAACCAAGTTAGCAATTACAGCTATGGGGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAATATGTTGAGGAGGTGTTCAGGATAAAGGATGTTTTGCTTAACTATGAAGAAGAGTCTGATTCAGTGTTGTTTGATTCACTGAGGAGGCTTCAACTGATGGAACTCACAGTGGATCTTCTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGATCAAGGGACATTTGTCAACTTGCGCGAACTCTTATCGaTGGCTGGAAAGAAATGGTGGATGAGTGGGTCAAGGCTACCACAGCTATTGCAGTAGGTTCTGAAGGTACTCCAGATTCAGTAAATCCATCTGTAGTTGACGATGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAGCTCCAACTGGTTCGATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACACAGTGGGGAATTCATCAAGAACCGTGAACATAGAAGACCAGCTCTTAACAGTCAAAATACAGGAAAAAGGAAACCTCAGGCTTCAAATGAGGCAAACATCATTGCCAGGGACAGTAAGGGTCAGCAAGCAAAGAAAAATGAGGCTGCTGTGAGGCTAAATAAACCAGTGACTGCTGATTCTGGCCCTGGCAGACCACCAAAATCAACCATGCAGAAGAAAGGCAATATTGAGCAGAAGATGCAACAAAATATAGTGAAGAGTGCTATCCCAAAAAATCCTCATGTTCATCAGTTAGATAAATTCCAGGGTTCGGACAACGCTGCAGTCCAAGTGAAGTTAGAAGCCACTAAGAGGAAACTTCAGGAGCGGTATCAACAAGCTGAAATTGCTAAGAGGCAGCGGACGGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGAATTGGTCACCGAAATCTGCATGTCAAACCCGGAAATCACAAGAGGCAATGGGGTCATGGACGAAGATAG 1353 0.442 MMRSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLSRCLGCERVELAVSVDDDGGEGGGGCKSGFDGDGAEFEFEAGASKESKVNITGDDPGEKNMNQVSNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNYEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSRDICQLARTLIDGWKEMVDEWVKATTAIAVGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHSGEFIKNREHRRPALNSQNTGKRKPQASNEANIIARDSKGQQAKKNEAAVRLNKPVTADSGPGRPPKSTMQKKGNIEQKMQQNIVKSAIPKNPHVHQLDKFQGSDNAAVQVKLEATKRKLQERYQQAEIAKRQRTVQVMELHDLPKQGIGHRNLHVKPGNHKRQWGHGRR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2912 450 SMART TFS2_5 140 215 IPR003617 GO:0005634
Ssu7g2912 450 MobiDBLite consensus disorder prediction 429 450 - -
Ssu7g2912 450 MobiDBLite consensus disorder prediction 435 450 - -
Ssu7g2912 450 MobiDBLite consensus disorder prediction 273 296 - -
Ssu7g2912 450 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 221 IPR035441 -
Ssu7g2912 450 MobiDBLite consensus disorder prediction 268 354 - -
Ssu7g2912 450 CDD TFIIS_I 141 214 - -
Ssu7g2912 450 Pfam TFIIS helical bundle-like domain 165 213 IPR017923 -
Ssu7g2912 450 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 131 224 IPR035441 -
Ssu7g2912 450 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 449 IPR044805 -
Ssu7g2912 450 Coils Coil 390 413 - -
Ssu7g2912 450 MobiDBLite consensus disorder prediction 298 316 - -
Ssu7g2912 450 ProSiteProfiles TFIIS N-terminal domain profile. 141 216 IPR017923 -
Ssu7g2912 450 MobiDBLite consensus disorder prediction 227 247 - -
Ssu7g2912 450 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2912 Ssu-Chr7 63736215 63740348 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu7g2912 Med26 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2912 - - gmx:100775579 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2912 7 63736215 63740348 Ssu7g2912 7 63736215 63740348 ECH