Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2903 ATGTCCCTGGAAGAGTCTCTAAGATCTCTCTCCCTCGACTACCTCAACCTTCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGTCGTTTGGTCCACGCGCACCGCTGTATCTTGGCCGCACGCAGCCTCTTCTTCAGGAAATTCTTCTGCGGACCCGACCCGCCGCCGGGAGTCGACCCCTCCGGCGCGTCCCGGAGCAACGCTGGTACGGCAGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCGGTGGGGTACGAGGTGTTCTTGCTGTTGCTACAGTTCCTCTACAGTGGACAAGTCTCGATCGTGCCTCAGAAGCACGAGGCGAGGCCCAATTGCGGCGAGCGAGGATGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACCCTCACTGCTGCCAGATACTTCGGCGTCGAACAGCTCGCATTGCTCACTCagAAACAACTAGCGAGCATGGTAGAGAAAGCCTCAATCGACGATGTGATGAAAGTGCTGATAGCATCGAGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCCAAGTCAGGTCTTCCTCCGGAGGTGCTGGCCAAGCACCTCCCCATCGACGTGGTGGCAAAGATCGAAGAGCTCCGTCTCAAATCCTCCCTCGCACGCCGCTCCCTAATGCCCCTCCAGCACCCGCACCACCACGACCTCGCCCCCGACGTCGAGGACCAGAAAATCCGCCGAATGCGCCGCGCCCTCGACTCCTCCGACGTCGAACTCGTCAAGCTCATGGTCATGGGCGAAGGCCTCAACCTTGACGAAGCGCTCGCCTTGCACTACGCGGTCGAAAATTGCAGCAGGGAAGTCGTCAAGGCCCTGCTCGAACTAGGGGCCGCCGATGTCAACTTCCCCTCGGGCCCCGCCGGGAAAACGCCACTTCACGTCGCCGCCGAGATGGTGTCACCAGAGATGGTGGCGGTGCTGCTAGACCACCACGCGGACCCCAACGTCCGAACCATGGATGGTGTGACCCCTTTGGACATCCTCAGAACCCTAACCTCGGACTTCCTCTTCAAAGGGACTGTCCCTGGACTCACCCACATTGAGCCCAACAAGCTCAGGCTGTGCTTGGAGCTCGTGCAATCCGCGGCTCAAGTTTTTTCTCGTGAAGAAGGGAACAATGTTAACAACGACAACACCAACAATAGCGCTGCTGCTTCTGCTTCTGCTTCCGCTTCCGCAACCGCTATTTATCCGCCAATGAGTGACGACCACAGCAGCGGCAATTTGGACTCGAGGTTGGTGTATCTCAACCTCGGCGCCACGCCACAAATGGGTGACGATGATAGTAGCCAGAGGGAAACCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCATCAATGTACCATCACTCTCATGACTTCTAG 1443 0.587 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGVDPSGASRSNAGTAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLTAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPLQHPHHHDLAPDVEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPSGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTMDGVTPLDILRTLTSDFLFKGTVPGLTHIEPNKLRLCLELVQSAAQVFSREEGNNVNNDNTNNSAAASASASASATAIYPPMSDDHSSGNLDSRLVYLNLGATPQMGDDDSSQRETMNRHGSQGGGCDPSMYHHSHDF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2903 480 SMART ANK_2a 311 340 IPR002110 GO:0005515
Ssu7g2903 480 SMART ANK_2a 276 306 IPR002110 GO:0005515
Ssu7g2903 480 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Ssu7g2903 480 Pfam Domain of unknown function (DUF3420) 197 253 IPR024228 -
Ssu7g2903 480 PANTHER REGULATORY PROTEIN NPR5 1 480 - -
Ssu7g2903 480 SUPERFAMILY POZ domain 9 160 IPR011333 -
Ssu7g2903 480 SMART BTB_4 25 162 IPR000210 GO:0005515
Ssu7g2903 480 ProSiteProfiles Ankyrin repeat region circular profile. 311 341 - -
Ssu7g2903 480 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Ssu7g2903 480 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Ssu7g2903 480 Gene3D Potassium Channel Kv1.1; Chain A 3 195 IPR011333 -
Ssu7g2903 480 Gene3D - 243 359 IPR036770 -
Ssu7g2903 480 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Ssu7g2903 480 MobiDBLite consensus disorder prediction 444 480 - -
Ssu7g2903 480 CDD BTB_POZ_NPR_plant 8 162 - -
Ssu7g2903 480 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Ssu7g2903 480 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 480 IPR044284 GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2903 Ssu-Chr7 62662147 62665539 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu7g2903 BTB 4.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2903 K14508 - gmx:100811388 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1566 4 26694028 26696400 Ssu7g2903 7 62662147 62665539 PCT