Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2887 ATGGCGACTGAAACTGACTCAAGAGATAGCTCTCACATTGTGCTCAAACAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAGGTCCATTGTCAAGGAACGTTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCTAAATTGACACTCAAGCACTTAAATGCTGAGGCGAGGTGCATGACCAAAGCAAGGAGACTTGGGGTTTGTACTCCCGTGCTGTTTGCTGTAGATCCTGTGTTGCACACTTTGACATTTGAGTATATTGAGGGCAATTCAGTCAAAGATGTATTTCTTGAATTCGGGTCACGTGGGGTTGACAAAGAGTGTTTGGACAACATTGCATCCCAAATTGGTGATGCAATTGGAAAGCTACATGATGGTGGTCTTGTTCATGGTGATTTAACAACATCAAACATGTTACTCAAGAATGGTACCAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCGGAAGATAAAGCTATCGATTTGTATGTTCTGGAAAGAGCCATTCTGTCAATGCATTCTTCATGTGGGAATGTGACGGATCAGATACTTGCCGCATACCGCAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAGtaCTCTGA 651 0.4286 MATETDSRDSSHIVLKQGAEARVFESSFVGRRSIVKERFSKKYRHPTLDSKLTLKHLNAEARCMTKARRLGVCTPVLFAVDPVLHTLTFEYIEGNSVKDVFLEFGSRGVDKECLDNIASQIGDAIGKLHDGGLVHGDLTTSNMLLKNGTKQLVLIDFGLSFTSTLPEDKAIDLYVLERAILSMHSSCGNVTDQILAAYRKSSKQWSSTLNKLAQVL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2887 216 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Ssu7g2887 216 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Ssu7g2887 216 ProSiteProfiles Protein kinase domain profile. 9 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2887 216 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Ssu7g2887 216 PANTHER O-SIALOGLYCOPROTEIN ENDOPEPTIDASE 1 215 IPR022495 GO:0004674
Ssu7g2887 216 Pfam Protein kinase domain 41 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2887 216 SMART serkin_6 9 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2887 216 TIGRFAM arch_bud32: Kae1-associated kinase Bud32 15 214 IPR022495 GO:0004674
Ssu7g2887 216 Gene3D Transferase(Phosphotransferase) domain 1 108 216 - -
Ssu7g2887 216 PANTHER - 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2887 Ssu-Chr7 61564333 61566653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2887 17 160 MAP Kinase Kinase Kinase AT5G66710 27.891 5.02e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu7g2887 Pkinase 2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2887 K08851 - gmx:100782376 375.17