Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2882 ATGGCAAAGAGGAAGAGCTGGTTTGGATGGGTGAAAAGGCTATTCACTTCTGAGTCAAACGACAACAAAAAGCCTAACAAATGGGGGTGGAGTTTTGGAAGGATTAAGCAGAAACAGTATCCTACAATTACAGCTCCAAATAGGACATTGATTGAAGCAAGTGCAGAGCAGAGAAAGCATGCTTTAACTGTGGCTATTGCAACAGCAGCAGCTGCTGAGGCTGCAGTTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAGGTGCTTCTCGCTCTTACTCATATCTTTATAAGGGAGACAGAAGTCTAGCTGCCATCAAGATTCAAAGTGCATACCGTGCACATCTTGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTTATAAGACTGCAAGCCATAATTCGTGGTCAATCTGTGAGACGCCAAGTGTCAAACACTACACAGAATTTTCCCTCCAATGCAAGAAATCAGGTGGAAATTCAGGAAAGAAGCAGCCATACTTCTGAAAAGATCAAACAAAGtccaaagcaaaagaaaaagttagAAGAGAAGGAACTGAAGTCTGAATGCAATAATCAAAGAACATGGGATTGTAGCTTGCTCTCAAGAGAAGACATTGAAGCTATATGGTTTAGAAAACAAGAGGCCATGGTCAAAAGAGAGCGCATGAAGCAGTACTCTTCTTCACAAAAGGAGAGAAAAAATCCCCAAATGGTGGAAGAATCTGTACACAACATGGATTTTGGAAGGGAGAGCTGCCGTACACTTGGAGAGTTGCTACATAAAGAAACATGTGATTGGGATGTGCTTTATAAAGCAACTCTTCCTTCAAACTctatgacaataaaaaaagaattgcaAGAAGAAGGTTTGAGTCCACAAATTTCAATCCCAAGGAaatcattttctcttgtaaGAAGAAGTTCAAATGGGGATGAGAGTTCTATATCAAATTCTCCAGTTTTTCCCACTTTCATGGCTGTTACTGAATCCAGCAAAGCAAAGATGAGGTCTATTAGCACACCAAAGCAAAGAACAGGAATTCTGGATATATGCTCCAATCAGAATGAGCCTCACAAGGAAGGCATTTCCTTCTGCCCTTCTTTTTATGGTGCAACTAGTAGTACCAATGAAAACAATGCAAGTTATCAACAAAGATGCTAG 1170 0.3949 MAKRKSWFGWVKRLFTSESNDNKKPNKWGWSFGRIKQKQYPTITAPNRTLIEASAEQRKHALTVAIATAAAAEAAVAAAHAAAEVVKLTGASRSYSYLYKGDRSLAAIKIQSAYRAHLARKALRALKGVIRLQAIIRGQSVRRQVSNTTQNFPSNARNQVEIQERSSHTSEKIKQSPKQKKKLEEKELKSECNNQRTWDCSLLSREDIEAIWFRKQEAMVKRERMKQYSSSQKERKNPQMVEESVHNMDFGRESCRTLGELLHKETCDWDVLYKATLPSNSMTIKKELQEEGLSPQISIPRKSFSLVRRSSNGDESSISNSPVFPTFMAVTESSKAKMRSISTPKQRTGILDICSNQNEPHKEGISFCPSFYGATSSTNENNASYQQRC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2882 389 MobiDBLite consensus disorder prediction 146 163 - -
Ssu7g2882 389 Gene3D - 103 151 - -
Ssu7g2882 389 PANTHER IQ-DOMAIN 12 1 381 - -
Ssu7g2882 389 MobiDBLite consensus disorder prediction 146 188 - -
Ssu7g2882 389 Pfam Protein of unknown function (DUF4005) 309 352 IPR025064 -
Ssu7g2882 389 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Ssu7g2882 389 PANTHER IQ-DOMAIN 5-RELATED 1 381 - -
Ssu7g2882 389 SMART iq_5 102 124 IPR000048 GO:0005515
Ssu7g2882 389 SMART iq_5 125 146 IPR000048 GO:0005515
Ssu7g2882 389 MobiDBLite consensus disorder prediction 164 188 - -
Ssu7g2882 389 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Ssu7g2882 389 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2882 Ssu-Chr7 61366401 61368863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2882 1 389 IQD Protein Family AT5G03960 43.447 7.74e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2882 - - gmx:100800767 595.504