Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2878 ATGGATCGCACTACCAAACGCAACCGCTCGTTCTCCTACTCCACTCTCTTTAACCTTGAGCCTTTGAGGAACTTTCAACTTCCacatgaagatgatgatgattttgattattatgGGAATAGTAGTCTCGATGATGAGAGCAGAGATAGCCAAGGTAGTAGGGCAAATCACAGTGATGGAAATGTGCTTGCAAGGGAGGGGAATTTGTTGAGGAAGAGGGCGGTGTCTCAGAACAGTGATACTGATGATGAGGAAGAGGGAAGATATTATGGGACATACATGACAGAGGAGCGATATCGATCAATGCTTGGTGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCATGTCTAATCCTGCTCGAAATCAGGTTGCTGTTCCTCCTGTCAAAAGTAACAATGGCTTAAAAGTTCGAAACTCAGGGAATGATTACAGGGGAGCATTGCATGCTGCAGAAAGTGCACCCGAATGGCTTCATGATTCGAGTAATCAGAAATCAGGGAACTACAGTCTTGCAGATTTCAAGTGGCGATATGGCACTGATAGGATTATGTATGAACCTGCTTCTTTGGACATTGGGGATGGTGTCACTTACAAGATTCCTCCAATTTACGATACGTTGGCCTCAATGCTGAACCTTCCAAACTTCTCGGATATCCATGTTGAGGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCAGCTGATAAAAGGTTTGGGACCAGAAATCGAGCAGGCATGGGGGAACCCCTATCCCAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAGTTCACCTCATAAATTCAGTCTGAAAGTGTCTAATGTTGGTTTGAATTCATCCATGCCGGAGGGTGCTGCTGGAAGCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCGAAGAAGGAAAAGGTAAAGAAAGATCCTGCTTTGATAGAGAAGGAAGAAATGGATCGAATTGGAAAGATTTGGATAAACATCGTAAAAAGAGACATACCAAAGCATCATAAGAATTTTACTACTTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGAGTACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCACTTAAATCGATTAAGGGTGCTAACGTTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCCGAAGTCAGgaaaagagaggagaaagaagCTGCTGAAGCTTTGAAGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGTACCCTCTTCAGATGCTTTACCCTTGGTAGATGAAAATTCAAATGATCAAGATGCACTGTTTGACTCTTCAGATGCTGGGCATAATGAGGAGGAAGATCCGGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAGAAGGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTGCGCCAGGTGGGGGAAACTGATTCACTTACACAGCAAGTAGCAGGAGCAAGTAACATTGATTTGCAAACCCCATCAACCATGCCCGTGGTATCCACAGTTCAGACACCGGAATTATTTAAAGGTTGTCTAAAAGAATATCAGTTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATCCAGGCTATGGCATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAGCTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTCATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTCTTAGATGAAGCCCAGGCAATCAAAAGTTCAACCAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACAGGTACGCCTGTTCAGAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAAGAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCATTCTATCAAGCTATTAAGAACAAGATATCTCTTTCTGGATTGTTTGATAGTAATCGCAGGCAGCTCAACGACAAGAAAGTTATGAATTTAATGAATATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAACGAAGGAAGCACATACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATATATACTATCCTGGTGGGCATAACCCGATATCATATGAGatACCAAAACTTGTCTATCAAGAGGTTATGCAAAGTTCTGAAACTTTCAGTTCGGCTGTTGGTCATGGTATCTCCCGAGAATCTTTTCagaaatgttttaatatttttagaccTGAAAATGTTCATCAATCTATCTTCTCAGAAGATATTGTTAAAAGTGGAAACTTTGGTTTTACCCATTTGATGAATTTGTCTCCCCAAGAGGTGACATTTATGGCCACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGAACATAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATAGGTGATCCTGAATGTAGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTACTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGGCCCACCAATGCTCCCTTTGAGGCCTTGGTTACCTCACATCAGGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCGGTATACACATATATCCCGCCAGCTAGAGCTCCCCCAATTCGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTATTTGTGGGATTTGTACGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTCCTCATTTAATTCAAGAGATCGATTCTGAATTACCCATTTCACAGCCTGCACTTCAGTTAATGCACAGTATTTTTGGCTCTTCACCACCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTAtagaaaatatagatattttagaCTTGATGGGTCATCCACAATTCAGGACCGCAGAGACATGGTCAAAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACCGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAATTGCAACAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGGTAAGCAAAAGAGAAAACCTGCGAGGGCTATACGGATAAATGAGGAGGGTGATGCGTCTCTGGAAGATCTAACAAACTGTCTAGCCGAGGGAACTGCAGATAACGAAATTTCCATGGATCCGGAGGGACCAAAGTCCAGTAATAAAAAGagcAAAGCAGCTTCCGACAAGAAAAAATCGAGGCCACAGAATTCTCAGAAGAAGATGAATGGCAAGCGGACCCATTTTCCACCTCCACGTGATTTCAGTTCTGGAGGTTTTAAAGCAGAAACAGTTCAACACGTCTTAAGACGTGCTGACTTCTCACAATAG 4485 0.4114 MDRTTKRNRSFSYSTLFNLEPLRNFQLPHEDDDDFDYYGNSSLDDESRDSQGSRANHSDGNVLAREGNLLRKRAVSQNSDTDDEEEGRYYGTYMTEERYRSMLGDHVQKYKRRRKDAMSNPARNQVAVPPVKSNNGLKVRNSGNDYRGALHAAESAPEWLHDSSNQKSGNYSLADFKWRYGTDRIMYEPASLDIGDGVTYKIPPIYDTLASMLNLPNFSDIHVEEFYLKGTLDLGSLAAMMAADKRFGTRNRAGMGEPLSQYESLQARIKAMPASSSPHKFSLKVSNVGLNSSMPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKEKVKKDPALIEKEEMDRIGKIWINIVKRDIPKHHKNFTTFHRKQLIDAKRFSEYCQREVKMKVSRSLKSIKGANVRTRKLARDMLLFWKRVDKEMAEVRKREEKEAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVPSSDALPLVDENSNDQDALFDSSDAGHNEEEDPEEAELKKEALKAAQEAVSKQRRLTNAFDSACLRLRQVGETDSLTQQVAGASNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKTEVMVHCKLSSRQQAFYQAIKNKISLSGLFDSNRRQLNDKKVMNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELEDIYYPGGHNPISYEIPKLVYQEVMQSSETFSSAVGHGISRESFQKCFNIFRPENVHQSIFSEDIVKSGNFGFTHLMNLSPQEVTFMATGSFMERLLFSMMRWEHKFLDEVLDFLIETTIGDPECSYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPTNAPFEALVTSHQDRLLSNARLLHSVYTYIPPARAPPIRAHCSDRNFSYKMIEELHDPWVKRLFVGFVRTSECNGPRKPDNPPHLIQEIDSELPISQPALQLMHSIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVKDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKGKQKRKPARAIRINEEGDASLEDLTNCLAEGTADNEISMDPEGPKSSNKKSKAASDKKKSRPQNSQKKMNGKRTHFPPPRDFSSGGFKAETVQHVLRRADFSQ 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 1434 1454 - -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 483 519 - -
Ssu7g2878 1494 Pfam SNF2-related domain 608 895 IPR000330 GO:0005524|GO:0140658
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 1422 1494 - -
Ssu7g2878 1494 Pfam Helicase conserved C-terminal domain 1209 1319 IPR001650 -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 30 53 - -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 114 139 - -
Ssu7g2878 1494 Gene3D - 588 830 IPR038718 -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 76 91 - -
Ssu7g2878 1494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1360 IPR001650 -
Ssu7g2878 1494 PANTHER HELICASE SRCAP-RELATED 17 1459 - -
Ssu7g2878 1494 Gene3D - 1157 1424 IPR027417 -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 30 91 - -
Ssu7g2878 1494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 605 776 IPR014001 -
Ssu7g2878 1494 Coils Coil 430 469 - -
Ssu7g2878 1494 SMART helicmild6 1236 1319 IPR001650 -
Ssu7g2878 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 821 IPR027417 -
Ssu7g2878 1494 SMART ultradead3 589 784 IPR014001 -
Ssu7g2878 1494 CDD SF2_C_SNF 1198 1330 - -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 505 519 - -
Ssu7g2878 1494 Pfam DNA-binding domain 354 481 IPR020838 GO:0003677
Ssu7g2878 1494 ProSiteProfiles DBINO domain profile. 358 483 IPR020838 GO:0003677
Ssu7g2878 1494 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1459 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Ssu7g2878 1494 Gene3D - 831 900 IPR027417 -
Ssu7g2878 1494 MobiDBLite consensus disorder prediction 483 504 - -
Ssu7g2878 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2878 Ssu-Chr7 61212607 61230726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2878 646 894 RAD5 or RAD16-like Gene Family AT1G61140 24.194 5.03e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g2878 SNF2_N 6.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2878 K11665 - gmx:100796167 2534.98