Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2856 ATGGGGAGGGGGAAGATTGAGATTaagaaaattgagaatttgaacAGCAGGCAGGTTACCTTCTCCAAGAGGAGAAATGGGTTGCTCAAGAAGGCCAAAGAGTTGTCTGTTCTGTGTGATGCAGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAGCATACCCTTTCAAGGTACAGCAAAGGCACAGAATCAGATTGTGCAGAGCAACCTATTGATGTGTCCCCAACAGATGTTATGGAGCCTGATACTAACCTTCTGAAGGATGAAATAACAAAGCTTCACTCGGCATACTTAAGGATGATGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTGCAGCACTTAGAAAATCAACTGAGTGAAGGGATACTAGCTGTCAAAGACAAGAAGGAACAAGTACTTGTAGAACAGCTTAGGAGGTCCAGGATACAGGAGCAAAAGGCGATGCTGGAGAATGAAGTTCTGCGCAAACAGCTTGAggagatacaaaataaaacaaagacacaGTTCCTTGAATTTGGTTCTTTGGATAGGACATTTTCCAAGAACGGTTCAAAACCCCTTTTCAATTGTGCTTCAGAGGAAAATGACCTTTCAGATACTTCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCCAGAGGAAAGCATTGAAGATGGAACCTTGCAACGATTCAGGGAGTCAAGTGGCTTCACAGTGA 738 0.4133 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGTESDCAEQPIDVSPTDVMEPDTNLLKDEITKLHSAYLRMMGKELDGLSLKELQHLENQLSEGILAVKDKKEQVLVEQLRRSRIQEQKAMLENEVLRKQLEEIQNKTKTQFLEFGSLDRTFSKNGSKPLFNCASEENDLSDTSLQLGLSTDYGRQRKALKMEPCNDSGSQVASQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2856 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ssu7g2856 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu7g2856 245 PANTHER MADS BOX PROTEIN 1 223 - -
Ssu7g2856 245 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu7g2856 245 Coils Coil 124 144 - -
Ssu7g2856 245 Coils Coil 152 177 - -
Ssu7g2856 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ssu7g2856 245 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Ssu7g2856 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu7g2856 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2856 Ssu-Chr7 60176442 60179999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2856 1 238 MADS-box Gene Family AT5G13790 47.131 9.98e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu7g2856 K-box 5.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2856 - - gmx:100792278 439.499