Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2852 ATGGCTTCGTCTTCTTCCGATCCCGGCAAGTCCGAAGCTGGTGGCGGTTCGGAGACTCCGGAAGCAACCGTGGCGAACGATGAACAGTTACGGTTGAAGAAAGCGAAGAAAGAGAGAGTGTGCACCGCGAAGGAGCGAATCAGCAAAATGCCTCCTTGTGCTGCAGGCAAACGCAGCTCCATATACCGCGGCGTCACCAGacATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAAGAGGCAGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCGGGTGCTCTCATAAACTTTCCAGTGACTGATTATGCAAGAGATCTTGAAGAAATGCAGAATGTATCAAGAGAGGAATACCTAGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCCAAATACCGGGGTCTCTCCAGTCGATGGGATCCAACATATGGTCGTATGGCTGGATCTGACTACTTCAATAGTACATATTATGGTGAAGATTCAGCAGCAGAAACCAAATATCTAAGTAGTTTCAGCATAGAAAGAAAGATTGATTTAACAAGTTACATCAAATGGTGGGGGTCTAATAAAAGTCGACAACCTGATGCTGGAGCAAGATTTTCAGATGTTAAAAAGCATGGTTTTGCTGGAGATATTTGCTGCGAACTCAGAACATTGGAACAAAAAGTCCATCCTTCAGAACCATACCAGTTGCCAGTGTTAGGCATGCCTCATGAGAGGAGAAAACATGAACGTTCTTCAGTCTCTGCTTTAAGTATCTTGTCACAATCAGCTGCTTACAAGAACTTGCAACAGAAAGCATCAAAGAGACAGgaaaatagcaataataatgatgagaatgaaaataaaaataccatcAATAAATTGGACCATGGCAAGGCAGCTGAGAAATCTTCAAATAATGATGGTGGCCATGAAGGACTTGACATTGGAATGGGAATGAGTGGATCACTGCCTCTTCAAAGAAATGTTTACCAAATGACACCATTATTGTCTGCTCCGCTTTTGACAGCCTACAGTACTGTTGATCCCTCGGTAGATCCTGTTCTCTGGACGCCACATGTTCCCATACTTCCTTCTGCCCTTTCCGGTGTGGCTGAGGTTTCCAAGACTGAGACCAGTTCAACGTACACCATTTTTAAGCCAGACGAGTGA 1251 0.4333 MASSSSDPGKSEAGGGSETPEATVANDEQLRLKKAKKERVCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGALINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPTYGRMAGSDYFNSTYYGEDSAAETKYLSSFSIERKIDLTSYIKWWGSNKSRQPDAGARFSDVKKHGFAGDICCELRTLEQKVHPSEPYQLPVLGMPHERRKHERSSVSALSILSQSAAYKNLQQKASKRQENSNNNDENENKNTINKLDHGKAAEKSSNNDGGHEGLDIGMGMSGSLPLQRNVYQMTPLLSAPLLTAYSTVDPSVDPVLWTPHVPILPSALSGVAEVSKTETSSTYTIFKPDE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2852 416 SUPERFAMILY DNA-binding domain 60 128 IPR016177 GO:0003677
Ssu7g2852 416 MobiDBLite consensus disorder prediction 1 30 - -
Ssu7g2852 416 Pfam AP2 domain 61 119 IPR001471 GO:0003700|GO:0006355
Ssu7g2852 416 PANTHER BNAA03G19580D PROTEIN 2 411 - -
Ssu7g2852 416 ProSiteProfiles AP2/ERF domain profile. 61 127 IPR001471 GO:0003700|GO:0006355
Ssu7g2852 416 Gene3D AP2/ERF domain 61 129 IPR036955 GO:0003700|GO:0006355
Ssu7g2852 416 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Ssu7g2852 416 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Ssu7g2852 416 MobiDBLite consensus disorder prediction 304 335 - -
Ssu7g2852 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 411 - -
Ssu7g2852 416 MobiDBLite consensus disorder prediction 294 342 - -
Ssu7g2852 416 SMART rav1_2 61 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2852 Ssu-Chr7 60035535 60039911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2852 23 414 AP2-EREBP Transcription Factor Family AT2G41710 59.512 5.63e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g2852 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2852 K09285 - gmx:100795084 694.886