Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2848 ATGGTAACTGGAGTGTACAGTGACGTTCCTAATAGAAATGCACCCACATGGCTCAATGATGCATACAATCAACAATTTGTGGTAAGCACATTCAATAACATGAAGAACATACGGAATGTGTTGCAAGGGTTGAAACCCGAAATGCTAATGGTGTTTGCGCAGACTGCACTTGCTGCGGTTAATGTGATCTACAAGCTGGCCATCAAAGATGGAATGAGCATGAGGGTAGCTATTGCCTATCGTCTCCTTCTTGCATCAGCTTTCAGTATACCCCTGGCTCTTATTTTTGATAGGAAGAAGAGACCAAAGATTACTTGGAGGGTACTTATTATGGGATTTCTTTGTGGATTGTTTGGGGGAAGTTTATATCTAAATCTTTACCTCGAGGCATTGGCTTTGACATCCACAACGTCTGTGCTAGCCGTGACCAACCTTACTCCAATCATTACCTTCATTATGGCCATATCGTTCGGatttgaaaaattaaatttgagagtGGCAGAAGGAATGGCCAAggtgataggaacaataataggAACTAGTGGAGCTATGCTGCTGATCTTTTTCAAGgggatagaaattaaaattgtgtctTCCAAAATCAACCTTATGGATCAACATCAGAACCAAAATGTGCATATAGCACCACAACATTCTGACTCTCGTAGTAATTTATTGGGTGTTTCTTGTGCCATAGCAAGTTGTTGTTGTTTCTCTACGTGGTTCAACATTCAGGCTAAACTGAATAAAGAATGTCCAAGTTATCACTCAAGCACAGCTTTGACGTCCACAATGGGAGCAATACAGGCCATTGTTTTTGCTCTTTGTGTTGATAGGGATTGGAACCAATGGAAGCTTAATAACAATATTAGGCTTCTAACTGTGGTTTATTCGGGGATTGTGGTCTCCGGAGTAATGGTTATGGCTATTGCTTGGAGCATAAAAATGAGAGACCCTCTATTTGTGTCTGTTTTCAATCCTCTACAACTTTTGCTTGTGGTTGTCGCTGCGTATTTGATGTTGGATGAGAAATTATATCTAGGAAGTGTGCTTGGAGCAGTGTTGATCGTGTTTGGTTTATACGTAGTGCTTTGGGGCAAAagcaaagaaatgaaaaagaagagtCAATTAGAGCCATCAGAAATCACCAACGAGTCTGAAAATGTTGAAGCTGTTGCAATGTCCATGCCTGGAGATCATGATAATTAG 1209 0.383 MVTGVYSDVPNRNAPTWLNDAYNQQFVVSTFNNMKNIRNVLQGLKPEMLMVFAQTALAAVNVIYKLAIKDGMSMRVAIAYRLLLASAFSIPLALIFDRKKRPKITWRVLIMGFLCGLFGGSLYLNLYLEALALTSTTSVLAVTNLTPIITFIMAISFGFEKLNLRVAEGMAKVIGTIIGTSGAMLLIFFKGIEIKIVSSKINLMDQHQNQNVHIAPQHSDSRSNLLGVSCAIASCCCFSTWFNIQAKLNKECPSYHSSTALTSTMGAIQAIVFALCVDRDWNQWKLNNNIRLLTVVYSGIVVSGVMVMAIAWSIKMRDPLFVSVFNPLQLLLVVVAAYLMLDEKLYLGSVLGAVLIVFGLYVVLWGKSKEMKKKSQLEPSEITNESENVEAVAMSMPGDHDN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2848 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 80 178 - -
Ssu7g2848 402 Pfam EamA-like transporter family 46 186 IPR000620 GO:0016020|GO:0016021
Ssu7g2848 402 Pfam EamA-like transporter family 226 364 IPR000620 GO:0016020|GO:0016021
Ssu7g2848 402 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 41 389 - -
Ssu7g2848 402 PANTHER WAT1-RELATED PROTEIN 41 389 IPR030184 GO:0016021|GO:0022857
Ssu7g2848 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 281 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2848 Ssu-Chr7 59915928 59955150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2848 44 390 Nodulin-like Gene Family AT1G25270 39.193 4.02e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2848 - - gsj:114424758 479.944